Data from: Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula

Herrbach V, Chirinos X, Rengel D, Agbevenou K, Vincent R, Pateyron S, Huguet S, Balzergue S, Pasha A, Provart N, Gough C, Bensmihen S

Date Published: January 13, 2017

DOI: http://dx.doi.org/10.5061/dryad.s43c7

 

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Title TableS1_primers
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Description Table S1: Primer pairs used for Q-PCR on the Medicago truncatula genes
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Title Table S2. List of genes differentially regulated by NAA
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Description List of genes down-regulated in the NAA condition. The first column corresponds to the NimbleGen probe ID, the second to the equivalent Mt4 coding sequence reference when available. Affy ID corresponds to the more accurate medicago affymetrix probe. LFC: Log2 fold change. CT=control condition. NAA= 10-6M NAA; NF=10-7M NF; NAA+NF=10-6M NAA + 10-7M NF. All treatments are for 10h.
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Title Table S3. List of genes differentially regulated by Nod Factors
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Description Table S3. List of genes differently expressed in the NF treatment compared to control conditions. The first column corresponds to the NimbleGen probe ID, the second to the equivalent Mt4 coding sequence reference when available. Affy ID corresponds to the more accurate medicago affymetrix probe. LFC: Log2 fold change. CT=control condition. NAA= 10-6M NAA; NF=10-7M NF; NAA+NF=10-6M NAA + 10-7M NF. All treatments are for 10h.
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Title Table S4. List of genes differentially regulated by NAA+NF compared to control conditions
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Description List of genes differently expressed in the NF+NAA treatment compared to control conditions. The first column corresponds to the NimbleGen probe ID, the second to the equivalent Mt4 coding sequence reference when available. Affy ID corresponds to the more accurate medicago affymetrix probe. LFC: Log2 fold change. CT=control condition. NAA= 10-6M NAA; NF=10-7M NF; NAA+NF=10-6M NAA + 10-7M NF. All treatments are for 10h.
Download tableS4_NAA_and NF_DEG.xlsx (2.577 Mb)
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Title Table S5. List of genes from the first synergistic group
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Description List of genes in the first synergistic group. The first column corresponds to the NimbleGen probe ID, the second to the equivalent Mt4 coding sequence reference when available. Affy ID corresponds to the more accurate medicago affymetrix probe, "other affy ID" to some related affymetrix probes. LFC: Log2 fold change.pval BH= p-value obtained using a Benjamini Hochberg FDR test. CT=control condition. NAA= 10-6M NAA; NF=10-7M NF; NAA+NF=10-6M NAA + 10-7M NF. All treatments are for 10h.
Download TableS5_synergy_group1.xlsx (453.7 Kb)
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Title Table S6. List of genes differentially regulated by NAA+NF compared to NAA
Downloaded 11 times
Description List of genes differently expressed in the NF+NAA treatment compared to NAA condition. The first column corresponds to the NimbleGen probe ID, the second to the equivalent Mt4 coding sequence reference when available. Affy ID corresponds to the more accurate medicago affymetrix probe. pval BH= p-value obtained using a Benjamini Hochberg FDR test. LFC: Log2 fold change. CT=control condition. NAA= 10-6M NAA; NF=10-7M NF; NAA+NF=10-6M NAA + 10-7M NF. All treatments are for 10h.
Download TableS6_DEGNF+NAAvsNAA.xlsx (298.8 Kb)
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Title Table S7. List of genes from the second synergistic group
Downloaded 18 times
Description List of genes in the second synergistic group. The first column corresponds to the NimbleGen probe ID, the second to the equivalent Mt4 coding sequence reference when available. Affy ID corresponds to the more accurate medicago affymetrix probe, "other affy ID" to some related affymetrix probes. LFC: Log2 fold change.pval BH= p-value obtained using a Benjamini Hochberg FDR test. CT=control condition. NAA= 10-6M NAA; NF=10-7M NF; NAA+NF=10-6M NAA + 10-7M NF. All treatments are for 10h.
Download TableS7_synergy_group2vf.xlsx (61.49 Kb)
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Title Table S8. List of genes with a potential hormonal or LRF function
Downloaded 16 times
Description List of differentially expressed genes with a potential hormonal function. The first column corresponds to the NimbleGen probe ID, the second to the equivalent Mt4 coding sequence reference when available. Affy ID corresponds to the more accurate medicago affymetrix probe. All genes had a significant adjusted pvalue in at least one of the conditions tested. LFC: Log2 fold change. CT=control condition. NAA= 10-6M NAA; NF=10-7M NF; NAA+NF=10-6M NAA + 10-7M NF. All treatments are for 10h.
Download TableS8_revised.xlsx (22.18 Kb)
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Title Table S9. List of genes from the third synergistic group
Downloaded 13 times
Description List of genes in the third synergistic group. The first column corresponds to the NimbleGen probe ID, the second to the equivalent Mt4 coding sequence reference when available. Affy ID corresponds to the more accurate medicago affymetrix probe, "other affy ID" to some related affymetrix probes. LFC: Log2 fold change.pval BH= p-value obtained using a Benjamini Hochberg FDR test. CT=control condition. NAA= 10-6M NAA; NF=10-7M NF; NAA+NF=10-6M NAA + 10-7M NF. All treatments are for 10h.
Download tableS9_synergy_group3.xlsx (21.21 Kb)
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When using this data, please cite the original publication:

Herrbach V, Chirinos X, Rengel D, Agbevenou K, Vincent R, Pateyron S, Huguet S, Balzergue S, Pasha A, Provart N, Gough C, Bensmihen S (2017) Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula. Journal of Experimental Botany 68(3): 569-583. http://dx.doi.org/10.1093/jxb/erw474

Additionally, please cite the Dryad data package:

Herrbach V, Chirinos X, Rengel D, Agbevenou K, Vincent R, Pateyron S, Huguet S, Balzergue S, Pasha A, Provart N, Gough C, Bensmihen S (2017) Data from: Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.s43c7
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