Data from: Evaluating the reintroduction project of Przewalski’s horse in China using genetic and pedigree data

Liu G, Shafer ABA, Hu D

Date Published: April 17, 2014

DOI: http://dx.doi.org/10.5061/dryad.s4933

 

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Title Microsatellite genotyping data for three populations of Przewalski's horse
Downloaded 33 times
Description Genotyping data of Przewalski’s horse for 10 microsatellite loci. WHBC is the Wild Horse Breeding Center, GESRC is the Gansu Endangered Species Research Center and KNR is Kalamaili Nature Reserve.
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Title Allele Retain Simulation for Przewalski's horse
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Description We have tried these alternatives in the rare allele simualtion, including startN=20, 40; migrN=0, 2, 5, 10,17,20;
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Title Bottlesim results for Przewalski's horse
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Description We used BottleSim to do forwards-in-time simulations (also known as individual-based simulations), and predict the genetic impact of population reductions. Through simulation, we could monitor changes in the genetic composition of a population analyzing samples at specific time intervals based on a starting population value.We have tried variable scenarios of population size(15,50,100,200)
Download Bottlesim results for Przewalski's horse.rar (73.19 Kb)
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Title population size and pedigree inbreeding for WHBC and worldwide Przewalski's horse
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Description The annual population growth and inbreeding coefficients calculated based on known pedigree data of Przewalski’s horse from WHBC and the worldwide population (WHBC refers to the population from Xinjiang Wild Horse Breeding Center)
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Title inbreeding between pedigree and microsatellite
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Description Relationships between individual pedigree inbreeding coefficients (fp) and internal relatedness (IR) in Przewalski’s horse from Wild Horse Breeding Center (WHBC); Relationships between individual pedigree inbreeding coefficients (fp) and microsatellite derived inbreeding coefficients (fm). The fm was calculated using the software Coancestry (Wang 2011) based on TrioML model.
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When using this data, please cite the original publication:

Liu G, Shafer ABA, Zimmermann W, Hu D, Wang W, Chu H, Cao J, Zhao C (2014) Evaluating the reintroduction project of Przewalski’s horse in China using genetic and pedigree data. Biological Conservation 171(2014): 288-298. http://dx.doi.org/10.1016/j.biocon.2013.11.022

Additionally, please cite the Dryad data package:

Liu G, Shafer ABA, Hu D (2014) Data from: Evaluating the reintroduction project of Przewalski’s horse in China using genetic and pedigree data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.s4933
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