Data from: Hidden histories of gene flow in highland birds revealed with genomic markers

Zarza E, Faircloth BC, Tsai WLE, Bryson Jr. RW, Klicka J, McCormack JE

Date Published: August 19, 2016

DOI: http://dx.doi.org/10.5061/dryad.s8v80

 

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Title Structure Input File
Downloaded 8 times
Description Data matrix for Structure runs
Download STRUCTURE_input.txt (240.8 Kb)
Download README.txt (2.134 Kb)
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Title SNAPP Input File
Downloaded 4 times
Description Input file for SNAPP species tree runs in BEAST
Download SNAPP_input.xml (70.81 Kb)
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Title SNP_calls
Downloaded 7 times
Description Various files associated with calling SNPs from UCE loci for use with SNAPP and Structure
Download SNP_calls.zip (1.638 Mb)
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Title UCE Data Matrix
Downloaded 7 times
Description Concatenated UCE data matrix for phylogenetic analysis
Download S_File_2_UCE_incomplete_matrix_alignment_l...hylip (57.34 Mb)
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Title mtDNA alignment
Downloaded 4 times
Description Alignment of 13 mtDNA protein coding gene for phylogenetic analysis
Download S_File_3_mtDNA_prot_cod_reg_alignment_labe...hylip (250.7 Kb)
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Title mtDNA partitions
Downloaded 5 times
Description Partition file for mtDNA alignment
Download S_File_4_mtDNA_partitions_for_RAxML.txt (281 bytes)
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Title DNA Data Statistics Table
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Description Extended table with statistics on sequenced DNA data for individual specimens
Download S1_Statistics_table.xlsx (54.42 Kb)
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Title Scripts for SNP Calling
Downloaded 7 times
Description Various custom scripts used to call SNPs for Structure and SNAPP
Download Scripts.zip (6.9 Kb)
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When using this data, please cite the original publication:

Zarza E, Faircloth BC, Tsai WL, Bryson RW, Klicka J, McCormack JE (2016) Hidden histories of gene flow in highland birds revealed with genomic markers. Molecular Ecology 25(20): 5144-5157. http://dx.doi.org/10.1111/mec.13813

Additionally, please cite the Dryad data package:

Zarza E, Faircloth BC, Tsai WLE, Bryson Jr. RW, Klicka J, McCormack JE (2016) Data from: Hidden histories of gene flow in highland birds revealed with genomic markers. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.s8v80
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