Data from: Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway

Horn JW, Xi Z, Riina R, Peirson JA, Yang Y, Dorsey BL, Berry PE, Davis CC, Wurdack KJ

Date Published: September 24, 2014

DOI: http://dx.doi.org/10.5061/dryad.sb1j1

 

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Title Complete dataset with all nucleotide positions
Downloaded 18 times
Description 10-marker, 197-taxon, 17kb dataset of Euphorbia plus subfamily Euphorbioideae outgroups based on the dataset of Horn et al. (Mol. Phylogenet. Evol. 63:305–326, 2012), with 23 additional Euphorbia taxa. This Nexus file archives the full alignment, exclusion sets, and locus partitions.
Download Euphorbia10markerComplete.nex (3.369 Mb)
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Title Exclusion sets, data partitions & models, and Bayesian analysis parameters
Downloaded 11 times
Description 10-marker, 197-taxon, 11.5kb dataset of Euphorbia plus subfamily Euphorbioideae outgroups based on the dataset of Horn et al. (Mol. Phylogenet. Evol. 63:305–326, 2012), with 23 additional Euphorbia taxa. This Nexus file has exclusion sets removed from the full-length 17kb dataset (i.e., "Eliminate" command in PAUP execution of the full-length 17kb dataset), and archives data partitions and models, and MrBayes run parameters as described in the Supplemental Methods. See Table S2 for a fuller description of the subset partitions within each of the 15 partitions.
Download Euphorbia10markerExclusionSets&Bayes.nex (2.298 Mb)
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Title Divergence dating analysis dataset and execution parameters
Downloaded 16 times
Description 10-marker, 197-taxon, 11.5kb dataset of Euphorbia plus subfamily Euphorbioideae outgroups based on the dataset of 10-marker, 197-taxon, 11.5kb dataset of Euphorbia plus subfamily Euphorbioideae outgroups based on the dataset of Horn et al. (Mol. Phylogenet. Evol. 63:305–326, 2012), with 23 additional Euphorbia taxa.. This xml file generated by BEAUTi v1.7.4 archives the details of calibration and starting-tree priors for the divergence-dating analysis using BEAST v1.7.4.
Download Euphorbia10markerBEAST.xml (2.559 Mb)
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When using this data, please cite the original publication:

Horn JW, Xi Z, Riina R, Peirson JA, Yang Y, Dorsey BL, Berry PE, Davis CC, Wurdack KJ (2014) Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway. Evolution 68(12): 3485-3504. http://dx.doi.org/10.1111/evo.12534

Additionally, please cite the Dryad data package:

Horn JW, Xi Z, Riina R, Peirson JA, Yang Y, Dorsey BL, Berry PE, Davis CC, Wurdack KJ (2014) Data from: Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.sb1j1
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