Data from: Clones or clans: the genetic structure of a deep-sea sponge, Aphrocallistes vastus, in unique sponge reefs of British Columbia, Canada

Brown RR, Davis CS, Leys SP

Date Published: March 13, 2017

DOI: http://dx.doi.org/10.5061/dryad.sc0nf

 

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Title Sample_information
Downloaded 5 times
Description Aphrocallistes vastus sample metadata including sequencing barcode identifier, full sample name, collection year, sample site, GPS coordinates, depth, and heading of the remote operated vehicle (ROV) during collection. Samples correspond to sequence data and are organized by sequencing barcode. This list include controls (samples sequenced twice as well as one Heterochone calyx control) and samples with poor sequence data which did not contribute to the analyses.
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Title Genotypes_ID_dataset_91samples_76loci
Downloaded 7 times
Description Aphrocallistes vastus single nucleotide polymorphism (SNP) genotypes for full sample set (all samples with adequate sequencing coverage/quality except for interspecies control) including sequencing controls. This dataset was used to examine clonality (identity) across samples. Samples are identified by sequencing barcode with sample site identifiers in the second column. Data are organized into two columns per locus with GenAlEx format (A=1,C=2,G=3,T=4, missing=0).
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Title POP_dataset_78samples_67loci
Downloaded 2 times
Description Aphrocallistes vastus single nucleotide polymorphism (SNP) genotypes for samples used in population analyses (all samples from sample sites with n > 5) excluding sequencing controls. Samples are identified by sequencing barcode with sample site identifiers in the second column. Data are organized into two columns per locus with GenAlEx format (A=1,C=2,G=3,T=4, missing=0).
Download POP_dataset_78samples_67loci.csv (24.12 Kb)
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When using this data, please cite the original publication:

Brown RR, Davis CS, Leys SP (2017) Clones or clans: the genetic structure of a deep-sea sponge, Aphrocallistes vastus, in unique sponge reefs of British Columbia, Canada. Molecular Ecology 26(4): 1045-1059. http://dx.doi.org/10.1111/mec.13982

Additionally, please cite the Dryad data package:

Brown RR, Davis CS, Leys SP (2016) Data from: Clones or clans: the genetic structure of a deep-sea sponge, Aphrocallistes vastus, in unique sponge reefs of British Columbia, Canada. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.sc0nf
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