Data from: Performance of partial statistics in individual-based landscape genetics

Kierepka EM, Latch EK

Date Published: September 17, 2014

DOI: http://dx.doi.org/10.5061/dryad.sc88q

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title MER_14_0246_Rcode
Downloaded 98 times
Description R code for spatial principal components analysis, partial Mantel test, distance-based redundancy analysis, and redundancy analysis
Download MER_14_0246_Rcode.txt (2.052 Kb)
Details View File Details
Title SimulationResults_MER_14_0246
Downloaded 79 times
Description Test statistics and p-values from simulated data. IBR corresponds to landscapes that had a pixel resistance of 5 or higher and all pixels had a resistance of 1 in the IBD landscapes. Results are separated by statistical test and type of landscape.
Download SimulationResults_MER_14_0246.xls (3.431 Mb)
Details View File Details
Title SampleInputFile_CDPOP
Downloaded 24 times
Description Input file for CDPOP. All categories are described in the CDPOP manual.
Download SampleInputFile_CDPOP.csv (980 bytes)
Details View File Details
Title SampleResistanceFile
Downloaded 22 times
Description Sample Resistance File that is an input for Mantel tests and CDPOP.
Download SampleResistanceFile.txt (2.197 Mb)
Details View File Details
Title Coordinates
Downloaded 48 times
Description Sample Coordinate File that is an input for dbRDA and RDA.
Download Coordinates.txt (9.767 Kb)
Details View File Details
Title ExampleBufferFile
Downloaded 24 times
Description Example of a the percent of habitat found in a buffer around each individual. This file is an input for RDA and dbRDA.
Download ExampleBufferFile.txt (6.437 Kb)
Details View File Details
Title ExampleEuclideanDistance
Downloaded 28 times
Description Example of a Euclidean distance file that is used as an input for both CDPOP and Mantel tests.
Download ExampleEuclideanDistance.txt (1.898 Mb)
Details View File Details
Title ExampleGenepopFile
Downloaded 33 times
Description Example of a genepop file that is the input to both Spagedi and adegenet to calculate Rousset's a and sPCA scores respectively.
Download ExampleGenepopFile.gen (22.52 Kb)
Details View File Details
Title ExampleRoussetsafile
Downloaded 30 times
Description Example of a matrix of Rousset's a between all individuals calculated in Spagedi. These serve as the response variable in both partial Mantel tests and dbRDA.
Download ExampleRoussetsafile.txt (1.189 Mb)
Details View File Details
Title ExamplesPCAScoresFile
Downloaded 16 times
Description Example of scores from the first two sPCA axes calculated in adegenet. This data serves as the response variable in RDA.
Download ExamplesPCAScoresFile.txt (10.30 Kb)
Details View File Details
Title SampleResistanceFile
Downloaded 19 times
Description Example of pair-wise resistances values calculated in ArcGIS. These files serve as the input for CDPOP and partial Mantel tests.
Download SampleResistanceFile.txt (2.197 Mb)
Details View File Details

When using this data, please cite the original publication:

Kierepka EM, Latch EK (2015) Performance of partial statistics in individual-based landscape genetics. Molecular Ecology Resources 15(3): 512-525. http://dx.doi.org/10.1111/1755-0998.12332

Additionally, please cite the Dryad data package:

Kierepka EM, Latch EK (2014) Data from: Performance of partial statistics in individual-based landscape genetics. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.sc88q
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: