Data from: Bats, primates, and the evolutionary origins and diversification of mammalian gammaherpesviruses

Escalera-Zamudio M, Rojas-Anaya E, Kolokotronis S, Taboada B, Loza-Rubio E, Méndez-Ojeda ML, Arias CF, Osterrieder N, Greenwood AD

Date Published: November 15, 2016

DOI: http://dx.doi.org/10.5061/dryad.sg0k6

 

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Title Megan results vampire bat virome
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Description TITLE: Assigned reads from the HTS data DESCRIPTION: MEGAN files corresponding to confirmed gammaherpervirus matching reads found within five Desmodus rotundus and Diphylla ecaudata vampire bat spleen samples. Viral assignment was performed using BLASTX against the GenBank non-redundant protein database and mapped with SMALT against a custom-built herpesviral database under a stringency of 60%. The γHV-matching reads were further selected by reciprocal BLASTX analysis using the following criteria: length of ≥100 bp, pairwise identity >50%, e-value <10-6, and independent hits to two different γHV proteins or at least two different regions of the same protein.
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When using this data, please cite the original publication:

Escalera-Zamudio M, Rojas-Anaya E, Kolokotronis S, Taboada B, Loza-Rubio E, Méndez-Ojeda ML, Arias CF, Osterrieder N, Greenwood AD (2016) Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses. mBio 7(6): e01425-16. http://dx.doi.org/10.1128/mbio.01425-16

Additionally, please cite the Dryad data package:

Escalera-Zamudio M, Rojas-Anaya E, Kolokotronis S, Taboada B, Loza-Rubio E, Méndez-Ojeda ML, Arias CF, Osterrieder N, Greenwood AD (2016) Data from: Bats, primates, and the evolutionary origins and diversification of mammalian gammaherpesviruses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.sg0k6
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