Data from: Mitochondrial genotype and phenotypic plasticity of gene expression in response to cold acclimation in killifish

Healy TM, Bryant HJ, Schulte PM

Date Published: November 29, 2016

DOI: http://dx.doi.org/10.5061/dryad.sg280

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Title Unique_Exon_Read_Counts
Downloaded 12 times
Description RNA-seq read count data for killifish individuals with northern or southern mitochondrial genotypes that were acclimated to either 15 or 5 degrees Celsius.
Download Unique_Exon_Read_Counts.csv (2.170 Mb)
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Title Gene_IDs_Names_Lengths
Downloaded 7 times
Description Reduced gene model information for the Fundulus heteroclitus genome containing gene IDs, gene names and gene lengths. Information was obtained from the F. heteroclitus genome assembly (http://marmot.bio.indiana.edu:7151/EvidentialGene/killifish/).
Download Gene_IDs_Names_Lengths.csv (2.262 Mb)
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Title GO_IDs
Downloaded 7 times
Description Orthologous GO annotations for the gene models in the F. heteroclitus genome assembly (http://marmot.bio.indiana.edu:7151/EvidentialGene/killifish/).
Download GO_IDs.csv (7.329 Mb)
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Title KEGG_IDs
Downloaded 11 times
Description Orthologous KEGG annotations for the gene models in the F. heteroclitus genome assembly (http://marmot.bio.indiana.edu:7151/EvidentialGene/killifish/).
Download KEGG_IDs.csv (351.1 Kb)
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Title RNA-seq and enrichment analyses R script
Downloaded 31 times
Description R code used for analysis of RNA-seq read count data and GO/KEGG enrichment analyses. All data used in these analyses are found in the additional files associated with this Dryad submission.
Download RNA-seq and enrichment analyses R script.txt (12.88 Kb)
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When using this data, please cite the original publication:

Healy TM, Bryant HJ, Schulte PM (2017) Mitochondrial genotype and phenotypic plasticity of gene expression in response to cold acclimation in killifish. Molecular Ecology 26(3): 814-830. http://dx.doi.org/10.1111/mec.13945

Additionally, please cite the Dryad data package:

Healy TM, Bryant HJ, Schulte PM (2016) Data from: Mitochondrial genotype and phenotypic plasticity of gene expression in response to cold acclimation in killifish. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.sg280
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