Data from: Genome-wide association study in Arabidopsis thaliana of natural variation in seed oil melting point, a widespread adaptive trait in plants

Branham SE, Wright SJ, Reba A, Morrison GD, Linder CR

Date Published: February 1, 2016

DOI: http://dx.doi.org/10.5061/dryad.sh2mb

 

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Title TableS1
Downloaded 13 times
Description Phenotypic, climatic, and geographic data for the Arabidopsis thaliana accessions used in this study.
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Title TableS2
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Description Seed oil melting points and box-cox transformed melting points for all replicates of the 391 Arabidopsis thaliana accessions.
Download TableS2.csv (34.85 Kb)
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Title TableS3
Downloaded 12 times
Description P-values and FDR-corrected values for the a priori candidate gene analysis.
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Title TableS4
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Description P-values and FDR-corrected values from GWAS based on analysis of boxcox-transformed melting points.
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Title TableS5
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Description Linkage disequilibrium between the two highly significant SNPs and all other SNPs within 1Mb up or downstream.
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Title TableS6
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Description P-values from GWAS with highly significant SNP on chromosome 3 (position=3860685 bp) as a covariate in the model.
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Title TableS7
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Description P-values from GWAS with highly significant SNP on chromosome 3 (position=3862256 bp) as a covariate in the model.
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Title TableS8
Downloaded 9 times
Description Genes found within the 400kb haplotype block surrounding highly significant SNPs.
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Title TableS9
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Description Annotation information for all potential a posteriori candidate genes from the FAD2 haplotype block.
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When using this data, please cite the original publication:

Branham SE, Wright SJ, Reba A, Morrison GD, Linder CR (2016) Genome-wide association study in Arabidopsis thaliana of natural variation in seed oil melting point, a widespread adaptive trait in plants. Journal of Heredity 107(3): 257-265. http://dx.doi.org/10.1093/jhered/esw008

Additionally, please cite the Dryad data package:

Branham SE, Wright SJ, Reba A, Morrison GD, Linder CR (2016) Data from: Genome-wide association study in Arabidopsis thaliana of natural variation in seed oil melting point, a widespread adaptive trait in plants. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.sh2mb
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