Data from: Reproductive workers show queen-like gene expression in an intermediately eusocial insect, the buff-tailed bumble bee Bombus terrestris

Harrison MC, Hammond RL, Mallon EB

Date Published: May 7, 2015

DOI: http://dx.doi.org/10.5061/dryad.sp048

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title phylip_input_27libraries
Downloaded 11 times
Description Phylip input file for neighbour joining tree
Download phylip_input_27libraries.txt (5.44 Kb)
Details View File Details
Title phylip_outtree_27libraries
Downloaded 6 times
Description Phylip tree file
Download phylip_outtree_27libraries.txt (594 bytes)
Details View File Details
Title phylip_outfile_27libraries
Downloaded 5 times
Description Phylip output file for neighbour joining tree
Download phylip_outfile_27libraries.txt (4.933 Kb)
Details View File Details
Title MA-7.bam
Downloaded 4 times
Description Alignment file for sample MA7: male adults, colony 7
Download MA-7.bam (925.6 Mb)
Details View File Details
Title MA-9.bam
Downloaded 3 times
Description Alignment file for sample MA9: male adults, colony 9
Download MA-9.bam (920.7 Mb)
Details View File Details
Title MA-11.bam
Downloaded 5 times
Description Alignment file for sample MA11: male adults, colony 11
Download MA-11.bam (1.181 Gb)
Details View File Details
Title ML-7.bam
Downloaded 5 times
Description Alignment file for sample ML7: male larvae, colony 7
Download ML-7.bam (917.7 Mb)
Details View File Details
Title ML-9.bam
Downloaded 6 times
Description Alignment file for sample ML9: male larvae, colony 9
Download ML-9.bam (1.025 Gb)
Details View File Details
Title ML-11.bam
Downloaded 4 times
Description Alignment file for sample ML11: male larvae, colony 11
Download ML-11.bam (1.021 Gb)
Details View File Details
Title MP-7.bam
Downloaded 4 times
Description Alignment file for sample MP7: male pupae, colony 7
Download MP-7.bam (1.007 Gb)
Details View File Details
Title MP-9.bam
Downloaded 3 times
Description Alignment file for sample MP9: male pupae, colony 9
Download MP-9.bam (941.6 Mb)
Details View File Details
Title MP-11.bam
Downloaded 4 times
Description Alignment file for sample MP11: male pupae, colony 11
Download MP-11.bam (1.153 Gb)
Details View File Details
Title MQ-7.bam
Downloaded 3 times
Description Alignment file for sample MQ7: adult mother queen, colony 7
Download MQ-7.bam (1.213 Gb)
Details View File Details
Title MQ-8.bam
Downloaded 3 times
Description Alignment file for sample MQ8: adult mother queen, colony 8
Download MQ-8.bam (1.125 Gb)
Details View File Details
Title MQ-9.bam
Downloaded 5 times
Description Alignment file for sample MQ9: adult mother queen, colony 9
Download MQ-9.bam (1.291 Gb)
Details View File Details
Title QL-7.bam
Downloaded 4 times
Description Alignment file for sample QL7: queen larvae, colony 7
Download QL-7.bam (930.2 Mb)
Details View File Details
Title QP-7.bam
Downloaded 4 times
Description Alignment file for sample QP7: queen pupae, colony 7
Download QP-7.bam (1.130 Gb)
Details View File Details
Title VQ-7.bam
Downloaded 2 times
Description Alignment file for sample VQ7: adult virgin queen, colony 7
Download VQ-7.bam (1.187 Gb)
Details View File Details
Title WAr-7.bam
Downloaded 3 times
Description Alignment file for sample WAr7: adult reproductive worker, colony 7
Download WAr-7.bam (875.4 Mb)
Details View File Details
Title WAr-8.bam
Downloaded 3 times
Description Alignment file for sample WAr8: adult reproductive worker, colony 8
Download WAr-8.bam (1.302 Gb)
Details View File Details
Title WAr-9.bam
Downloaded 3 times
Description Alignment file for sample WAr9: adult reproductive worker, colony 9
Download WAr-9.bam (1.112 Gb)
Details View File Details
Title WAu-8.bam
Downloaded 4 times
Description Alignment file for sample WAu8: adult worker with unknown reproductive status, colony 8. This was sample was later categorised as non-reproductive.
Download WAu-8.bam (1.095 Gb)
Details View File Details
Title WAu-9.bam
Downloaded 7 times
Description Alignment file for sample WAu9: adult worker with unknown reproductive status, colony 9. This was sample was later categorised as reproductive.
Download WAu-9.bam (1.136 Gb)
Details View File Details
Title WAu-11.bam
Downloaded 4 times
Description Alignment file for sample WAu11: adult worker with unknown reproductive status, colony 11. This was sample was later categorised as non-reproductive.
Download WAu-11.bam (1.021 Gb)
Details View File Details
Title WL-7.bam
Downloaded 3 times
Description Alignment file for sample WL7: worker larvae, colony 7
Download WL-7.bam (1.023 Gb)
Details View File Details
Title WL-8.bam
Downloaded 3 times
Description Alignment file for sample WL8: worker larvae, colony 8
Download WL-8.bam (1.093 Gb)
Details View File Details
Title WL-9.bam
Downloaded 3 times
Description Alignment file for sample WL9: worker larvae, colony 9
Download WL-9.bam (1.093 Gb)
Details View File Details
Title WP-7.bam
Downloaded 3 times
Description Alignment file for sample WP7: worker pupae, colony 7
Download WP-7.bam (1.056 Gb)
Details View File Details
Title WP-8.bam
Downloaded 8 times
Description Alignment file for sample WP8: worker pupae, colony 8
Download WP-8.bam (1.515 Gb)
Details View File Details
Title WP-9.bam
Downloaded 3 times
Description Alignment file for sample WP9: worker pupae, colony 9
Download WP-9.bam (1.208 Gb)
Details View File Details
Title All_counts
Downloaded 47 times
Description Contains raw read counts with transcript names as row headers and sample names as column headers
Download All_counts.txt (3.132 Mb)
Details View File Details
Title Reduced read count list
Downloaded 10 times
Description All transcripts with 50 or less mapped reads have been removed. This file was used for all differential expression analyses. See DESeq script
Download Counts (2.476 Mb)
Details View File Details
Title DESeq script
Downloaded 13 times
Description This is a standard script taken from the DESeq manual and was used for all differential expression analyses. It should be run within R and requires 'Design' and 'Counts' files.
Download DESeq_script (947 bytes)
Details View File Details
Title Sample design
Downloaded 9 times
Description This file is required for DESeq script and describes sampling design.
Download Design (896 bytes)
Details View File Details

When using this data, please cite the original publication:

Harrison MC, Hammond RL, Mallon EB (2015) Reproductive workers show queen-like gene expression in an intermediately eusocial insect, the buff-tailed bumble bee Bombus terrestris. Molecular Ecology 24(12): 3043-3063. http://dx.doi.org/10.1111/mec.13215

Additionally, please cite the Dryad data package:

Harrison MC, Hammond RL, Mallon EB (2015) Data from: Reproductive workers show queen-like gene expression in an intermediately eusocial insect, the buff-tailed bumble bee Bombus terrestris. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.sp048
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: