Data from: Robust regression and posterior predictive simulation increase power to detect early bursts of trait evolution

Slater GJ, Pennell MW

Date Published: October 8, 2013

DOI: http://dx.doi.org/10.5061/dryad.sp521

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Functions to perform posterior predictive model fitting
Downloaded 95 times
Description A series of functions written in the R language for performing posterior predictive simulation under Brownian motion and Early burst models of trait evolution.
Download Slater_Pennell_Post.Pred_functions.R (18.52 Kb)
Details View File Details
Title cetacean analyses
Downloaded 54 times
Description R code to perform posterior predictive and maximum likelihood model fitting to a cetacean body length dataset
Download cetacean analyses.R (10.67 Kb)
Details View File Details
Title fitContinuous_modified_cetaceans
Downloaded 29 times
Description A modified version of the fitContinuous function from the geiger library that allows a model to be fitted to a comparative dataset wherein the Brownian rate is permitted to vary along one, pre-specified internal edge of the phylogeny
Download fitContinuous_modified_cetaceans.R (6.109 Kb)
Details View File Details
Title Cetacean phylogeny
Downloaded 33 times
Description time calibrated phylogeny of cetaceans from Slater et al (Proc Roy Soc B 2010) and used for posterior predictive model fitting
Download whales_final.phy (5.678 Kb)
Details View File Details
Title cetacean body length data
Downloaded 30 times
Description cetacean body length data from Slater et al (Proc Roy Soc B 2010) and used for posterior predictive model fitting
Download Cetlengthdata.csv (3.951 Kb)
Details View File Details
Title Slater_Pennel_supplement
Downloaded 53 times
Description Supplementary results for posterior predictive tests performed on simulated data.
Download Slater_Pennel_supplement.pdf (232.8 Kb)
Details View File Details

When using this data, please cite the original publication:

Slater GJ, Pennell MW (2013) Robust regression and posterior predictive simulation increase power to detect early bursts of trait evolution. Systematic Biology 63(3): 293-308. http://dx.doi.org/10.1093/sysbio/syt066

Additionally, please cite the Dryad data package:

Slater GJ, Pennell MW (2013) Data from: Robust regression and posterior predictive simulation increase power to detect early bursts of trait evolution. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.sp521
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: