Data from: Systematic revision of the pocket gopher genus Orthogeomys

Spradling TA, Demastes JW, Hafner DJ, Milbach PL, Cervantes FA, Hafner MS

Date Published: March 3, 2016

DOI: http://dx.doi.org/10.5061/dryad.t0n42

 

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Title S17734
Description *BEAST analysis from trimmed, aligned sequences for the 5 genes, which yielded a total sequence length of 4,352 bp for 35 pocket gophers, with the 3 mitochondrial genes, Cytb, COI, and ND2 contributing 1,140, 1,460, and 488 bp, respectively, and the 2 nuclear genes, Bfib and IRBP, contributing 429 and 835 bp, respectively. Partition Finder indicated 3 partitions for the data: Cytb + COI (partition 1), ND2 (partition 2), and Bfib + IRBP (partition 3). Molecular substitution models suggested by jModelTest were GTR + I + G for partitions 1 and 2 and K80 + I for partition 3.
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Title S1.– Species-tree analysis (*BEAST) with posterior probabilities.
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Title S2.–Results of a principal component analysis of 91 specimens representing the 7 species of the subgenus Macrogeomys.
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Title S3.–Results of a principal component analysis and a discriminant function analysis of 28 specimens representing the 3 small-sized species of the subgenus Macrogeomys (M. cherriei, M. matagalpae, and M. underwoodi).
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Title S4.–Results of a principal component analysis and a discriminant function analysis of 35 specimens representing the 3 medium-sized species of the subgenus Macrogeomys (M. dariensis, M. heterodus, and M. thaeleri).
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Title Aligned sequence data
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When using this data, please cite the original publication:

Spradling TA, Demastes JW, Hafner DJ, Milbach PL, Cervantes FA, Hafner MS (2016) Systematic revision of the pocket gopher genus Orthogeomys. Journal of Mammalogy 97(2): 405-423. http://dx.doi.org/10.1093/jmammal/gyv185

Additionally, please cite the Dryad data package:

Spradling TA, Demastes JW, Hafner DJ, Milbach PL, Cervantes FA, Hafner MS (2016) Data from: Systematic revision of the pocket gopher genus Orthogeomys. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t0n42
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