Data from: Squamate phylogenetics, molecular branch lengths, and molecular apomorphies: a response to McMahan et al. (2015)

Harrington SM, Leavitt DH, Reeder TW

Date Published: September 11, 2016

DOI: http://dx.doi.org/10.5061/dryad.t2s33

 

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Title File S1. Unrooted RAxML tree from REA data
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Description File S1. This file contains the unrooted phylogeny estimated from the REA data using RAxML with outgroups excluded.
Download File_S1_Unrooted_tree_from_REA_data.tre (9.732 Kb)
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Title File S2. PBW trees and output
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Description File S2. This file contains the trees for all analyses of the PBW dataset, as well as the resulting PAUP* output. Individual files are described in the readme within the zip file.
Download File_S2_PBW_trees_and_output.zip (109.0 Mb)
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Title File S3. REA trees and output
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Description File S3. This file contains the trees for all analyses of the REA dataset, as well as the resulting PAUP* output. Individual files are described in the readme within the zip file.
Download File_S3_REA_trees_and_output.zip (13.90 Mb)
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Title Table S1. Number of apomorphies inferred under DELTRAN optimiziation.
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Description Table S1. Number of apomorphies inferred under DELTRAN optimiziation on the two basal branches within Squamata under different rootings. Rootings specified as "collapsed" refer to topologies in which Squamata is treated as two unresolved clades, whereas all others represent results from fully-resolved topologies.
Download Table S1 - DELTRAN results.xlsx (12.81 Kb)
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When using this data, please cite the original publication:

Harrington SM, Leavitt DH, Reeder TW (2016) Squamate Phylogenetics, Molecular Branch Lengths, and Molecular Apomorphies: A Response to McMahan et al.. Copeia 104(3): 702-707. http://dx.doi.org/10.1643/cg-16-391

Additionally, please cite the Dryad data package:

Harrington SM, Leavitt DH, Reeder TW (2016) Data from: Squamate phylogenetics, molecular branch lengths, and molecular apomorphies: a response to McMahan et al. (2015). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t2s33
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