Data from: Northern Bobwhite (Colinus virginianus) mitochondrial population genomics reveals structure, divergence, and evidence for heteroplasmy

Halley YA, Oldeschulte DL, Bhattarai EK, Hill J, Metz RP, Johnson CD, Presley SM, Ruzicka RE, Rollins D, Peterson MJ, Murphy WJ, Seabury CM

Date Published: January 6, 2016

DOI: http://dx.doi.org/10.5061/dryad.t39q6.2

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Bobwhite Mitogenome Reads-Illumina_PE
Downloaded 14 times
Description Illumina mitogenome PE reads (Part 1; split due to size; before extracting the contents of this zipped archive file, download the Part 1 and Part 2 files and combine them from a Linux/OSX command line by using cat, for example: cat Bobwhites_Illumina*.tar.gz > allBobwhites_Illumina.tar.gz). Bird ID's appear on subdirectories and fastq files
Download Bobwhites_Illumina1.tar.gz (831.3 Mb)
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Title Bobwhite Mitogenome Reads-Illumina_PE
Downloaded 13 times
Description Illumina mitogenome PE reads (Part 2; split due to size; before extracting the contents of this zipped archive file, download the Part 1 and Part 2 files and combine them from a Linux/OSX command line by using cat, for example: cat Bobwhites_Illumina*.tar.gz > allBobwhites_Illumina.tar.gz). Bird ID's appear on subdirectories and fastq files
Download Bobwhites_Illumina2.tar.gz (891.2 Mb)
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Title Scaled Quail Mitogenome Reads-Illumina_PE
Downloaded 6 times
Description Illumina mitogenome PE reads for one wild scaled quail.
Download ScaledQuail_Illumina.tar.gz (235.2 Mb)
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Title Quail Mitogenome Alignment For RAxML Tree
Downloaded 30 times
Description Quail Mitogenome Alignment For RAxML Tree (nexus)
Download tree_alignment.nex (1.314 Mb)
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Title Bobwhite Mitogenome Alignment_IDs
Downloaded 20 times
Description Bobwhite mitogenome alignment (nexus file) with individual IDs that match the RAxML tree and alignment file.
Download Group1_Group2.nex (1.136 Mb)
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When using this data, please cite the original publication:

Halley YA, Oldeschulte DL, Bhattarai EK, Hill J, Metz RP, Johnson CD, Presley SM, Ruzicka RE, Rollins D, Peterson MJ, Murphy WJ, Seabury CM (2015) Northern Bobwhite (Colinus virginianus) mitochondrial population genomics reveals structure, divergence, and evidence for heteroplasmy. PLOS ONE 10(12): e0144913. http://dx.doi.org/10.1371/journal.pone.0144913

Additionally, please cite the Dryad data package:

Halley YA, Oldeschulte DL, Bhattarai EK, Hill J, Metz RP, Johnson CD, Presley SM, Ruzicka RE, Rollins D, Peterson MJ, Murphy WJ, Seabury CM (2015) Data from: Northern Bobwhite (Colinus virginianus) mitochondrial population genomics reveals structure, divergence, and evidence for heteroplasmy. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t39q6.2
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