Data from: De novo assembly of a tadpole shrimp (Triops newberryi) transcriptome and preliminary differential gene expression analysis

Horn RL, Ramaraj T, Devitt NP, Schilkey FD, Cowley DE

Date Published: June 13, 2016

DOI: http://dx.doi.org/10.5061/dryad.t3j7m

 

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Title Triops newberryi transcriptome annotations
Downloaded 12 times
Description An excel file containing all of the functional characterizations from the different annotation databases including, Swiss-Prot, Pfam-A, TIGRFAM, SUPERFAMILY.
Download Horn_etal_Tnewberryi Transcriptome Annotat....xlsx (4.273 Mb)
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Title edgeR R-script
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Description An R file including the code used to run the differential expression analysis in the package edgeR.
Download edgR_RScript.R (1.015 Kb)
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Title Triops newberry transcriptome read counts
Downloaded 3 times
Description An excel file containing the raw read counts for the contigs identified by the annotations as coding sequences. These read counts are the input for the edgeR package to perform differential gene expression analysis.
Download Tnewberry Transcriptome Cds Read Counts.xlsx (550.0 Kb)
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Title Triops newberryi CateGOrizer results
Downloaded 3 times
Description An excel file containing the results from the program CateGOrizer. The file indicates the GO class id, term and how many contigs were classified under a specific GO term. This raw data was used to make Figure 1 in the Horn et al. manuscript.
Download Triops newberryi CateGOrizer Results.xlsx (42.72 Kb)
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When using this data, please cite the original publication:

Horn RL, Ramaraj T, Devitt NP, Schilkey FD, Cowley DE (2017) De novo assembly of a tadpole shrimp (Triops newberryi) transcriptome and preliminary differential gene expression analysis. Molecular Ecology Resources 17(2): 161–171. http://dx.doi.org/10.1111/1755-0998.12555

Additionally, please cite the Dryad data package:

Horn RL, Ramaraj T, Devitt NP, Schilkey FD, Cowley DE (2016) Data from: De novo assembly of a tadpole shrimp (Triops newberryi) transcriptome and preliminary differential gene expression analysis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t3j7m
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