Data from: Evolutionary novelty in a butterfly wing pattern through enhancer shuffling

Wallbank RWR, Baxter SW, Pardo-Diaz C, Hanly JJ, Martin SH, Mallet J, Dasmahapatra KK, Salazar C, Joron M, Nadeau N, McMillan WO, Jiggins CD

Date Published: January 22, 2016

DOI: http://dx.doi.org/10.5061/dryad.t3r02

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title ML_tree_Dennis
Downloaded 12 times
Description Maximum likelihood tree generated from the dennis region multiple alignment
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Title ML_tree_Ray
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Description Maximum likelihood tree generated from the ray region multiple alignment
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Title Plot data and code
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Description Data, code and readme for producing association plots and sliding window analysis in figs 2B, 2C, and S1A-C
Download Fig2B_2C_FigS1A-C_data_and_code.zip (4.591 Mb)
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Title Dennis BEAST dated FigTree file
Downloaded 4 times
Description Compiled Tree Annotator file for Dennis with dated node numerical values. Opens with FigTree program.
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Title Ray BEAST dated TreeFig file
Downloaded 15 times
Description Compiled Tree Annotator file for Ray with dated node numerical values. Opens with FigTree program.
Download Rays_BEAST_TreeAnnotate (139.5 Kb)
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Title Dennis and Ray Alignments
Downloaded 19 times
Description Multiple alignment fasta files for dennis and ray regions composed of full versions (including flanking regions and alleles with very poor coverage) and 'tree' versions (poor coverage rogue alleles removed) used to generate ML and BEAST trees.
Download Alignments.zip (342.3 Kb)
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Title Dennis_BEAST
Downloaded 7 times
Description BEAST input file for generating dennis region dated tree
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Title Ray_BEAST
Downloaded 16 times
Description BEAST input file for generating ray region dated tree
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When using this data, please cite the original publication:

Wallbank RWR, Baxter SW, Pardo-Diaz C, Hanly JJ, Martin SH, Mallet J, Dasmahapatra KK, Salazar C, Joron M, Nadeau N, McMillan WO, Jiggins CD (2016) Evolutionary novelty in a butterfly wing pattern through enhancer shuffling. PLOS Biology 14(1): e1002353. http://dx.doi.org/10.1371/journal.pbio.1002353

Additionally, please cite the Dryad data package:

Wallbank RWR, Baxter SW, Pardo-Diaz C, Hanly JJ, Martin SH, Mallet J, Dasmahapatra KK, Salazar C, Joron M, Nadeau N, McMillan WO, Jiggins CD (2016) Data from: Evolutionary novelty in a butterfly wing pattern through enhancer shuffling. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t3r02
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