Data from: Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

 

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Title Example_R_script
Downloaded 206 times
Description Example R script for running the analyses used in the paper.
Download Example_R_script.R (12.06 Kb)
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Title arthropods.env.txt
Downloaded 29 times
Description Input file (environmental information) for use with the example R script
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Title MBCarthropods.txt
Downloaded 21 times
Description Example input file for the R script, containing species X site data.
Download MBCarthropods.txt (41.53 Kb)
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Title RSW2_Test.R
Downloaded 15 times
Description R script for a Monte Carlo test to compare whether metabarcode and standard data select similar sets of sites for conservation, given a budget.
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Title RSW2SoftwareResults.txt
Downloaded 25 times
Description Input dataset for RSW2_Test.R (output from the RSW2 software package)
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Title Ailaoshan dataset: all fna and qual files
Downloaded 98 times
Description see Readme file: dryad metadata.txt
Download README.txt (3.114 Kb)
Download Ailaoshan.1-4.TCA.454Reads.fna.qual.zip (66.53 Mb)
Download Ailaoshan_all_Map.txt (3.374 Kb)
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Title Danum Valley dataset: all fna and qual files
Downloaded 57 times
Description see Readme file: dryad metadata.txt
Download README.txt (3.114 Kb)
Download Danum_Valley.1.2.TCA.454Reads.fna.qual.zip (126.6 Mb)
Download LahadDatu_all_Map.txt (2.679 Kb)
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Title Thetford dataset: all fna and qual files
Downloaded 60 times
Description see Readme file: dryad metadata.txt
Download README.txt (3.114 Kb)
Download Thetford.1.2.3.10.TCA.454Reads.fna.qual.zip (21.60 Mb)
Download UK1_all_Map.txt (6.862 Kb)
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Title arthropods.txt
Downloaded 17 times
Description Example input file for the R script, containing species X site data.
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When using this data, please cite the original publication:

Ji Y, Ashton L, Pedley SM, Edwards DP, Tang Y, Nakamura A, Kitching R, Dolman PM, Woodcock P, Edwards FA, Larsen TH, Hsu WW, Benedick S, Hamer KC, Wilcove DS, Bruce C, Wang X, Levi T, Lott M, Emerson BC, Yu DW (2013) Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding. Ecology Letters 16(10): 1245–1257. http://dx.doi.org/10.1111/ele.12162

Additionally, please cite the Dryad data package:

Ji Y, Ashton L, Pedley SM, Edwards DP, Tang Y, Nakamura A, Kitching R, Dolman PM, Woodcock P, Edwards FA, Larsen TH, Hsu WW, Benedick S, Hamer KC, Wilcove DS, Bruce C, Wang X, Levi T, Lott M, Emerson BC, Yu DW (2013) Data from: Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t3v71.2
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