Data from: Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and Hexachlorocyclohexane (HCH) degradation pathways

Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R

Date Published: December 31, 2014

DOI: http://dx.doi.org/10.5061/dryad.t4624

 

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Title AUDA00000000
Description Sphingobium chinhatense IP26
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Title ATDO00000000
Description Sphingobium sp. HDIPO4
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Title AUWY00000000
Description Sphingobium ummariense RL3
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Title ATHO00000000
Description Sphingobium quisquilarium P25
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Title ATDP00000000
Description Sphingobium lactosutens DS20
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Title ATIB00000000
Description Sphingobium baderi LL03
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Title 16S rRNA gene sequence of 9 Sphingobium
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Description Aligned sequences of 16S rRNA gene of nine Sphingobium strains included in this comparative study
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Title single copy genes
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Description Single copy genes i.e., (dnaA, frr, gyrB, infB, mnmA, nusA, pheS, rplB, rplC, rplM, rplS, rpoA, rpsB, rpsC, rpsH, rpsI, rpsJ, rpsS, trmD, tef, ychF, alaS, rplE, uvrC, lepA, rplI, rplP and rplD are retrieved from these genomes, followed by their concatenation and alignment.
Download single copy genes final9genomes_fasta2.aln (129.4 Kb)
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Title tetraallcorelationfinal
Downloaded 3 times
Description Tetra scores were calculated for these nine Sphingobium genomes and these values were used to generate the matrix followed by its dendrogram construction.
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Title Average Nucleotide Identity score 9 GENOMES
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Description This value for a genome was calculated in comparison with the another genome using Kostanditis ANI script. Then the matrix was generated, followed by its dendrogram construction.
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When using this data, please cite the original publication:

Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R (2014) Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and Hexachlorocyclohexane (HCH) degradation pathways. BMC Genomics, 15:1014. http://dx.doi.org/10.1186/1471-2164-15-1014

Additionally, please cite the Dryad data package:

Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R (2014) Data from: Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and Hexachlorocyclohexane (HCH) degradation pathways. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t4624
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