Data from: Temperate radiations and dying embers of a tropical past: the diversification of Viburnum

Spriggs EL, Clement WL, Sweeney PW, Madriñán S, Edwards EJ, Donoghue MJ

Date Published: March 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.t5kf1

 

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Title MrBayes_max_cred_tree
Downloaded 13 times
Description Maximum credibility clade tree from MrBayes analysis. This tree topology was fixed to remain constant in all subsequent BEAST dating analyses. It contains 138 species.
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Title Viburnum_alignment_3_partitions
Downloaded 9 times
Description The concatenated 10 gene sequence alignment including all matK, ndhF, rbcL, petB, psbA-trnH, rpl32-trnL, trnC-ycf6, trnK, and trnS-trnG sequences. There are 138 species and 9772 bp.
Download Viburnum_alignment_3_partitions.nexus (1.354 Mb)
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Title BEAST_crown_1_posterior_trees
Downloaded 8 times
Description Posterior trees from the BEAST analysis in which the MrBayes tree topology was constrained to remain constant and the crown age of Viburnum was fixed to 1 (uniform prior 0.99–1.01). Trees from the two runs were combined in LogCombiner with a Burnin of 1000000.
Download BEAST_crown_1_posterior_trees.nex (239.9 Mb)
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Title BEAST_pollen_fossil_posterior_trees
Downloaded 10 times
Description Posterior trees from the BEAST analysis in which the MrBayes tree topology was constrained to remain constant and the divergence times were calibrated with fossil pollen. Trees from the two runs were combined in LogCombiner with a Burnin of 1000000.
Download BEAST_pollen_fossil_posterior_trees.nex (239.0 Mb)
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Title BEAST_leaf_fossils_posterior_trees
Downloaded 10 times
Description Posterior trees from the BEAST analysis in which the MrBayes tree topology was constrained to remain constant and the divergence times were calibrated with leaf fossils. Trees from the two runs were combined in LogCombiner with a Burnin of 1000000.
Download BEAST_leaf_fossils_posterior_trees.nex (238.5 Mb)
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Title BEAST_crown_1_max_cred
Downloaded 14 times
Description Maximum clade credibility tree from the BEAST analysis in which the MrBayes tree topology was constrained to remain constant and the crown age of Viburnum was fixed to 1 (uniform prior 0.99–1.01).
Download BEAST_crown_1_max_cred.nex (155.1 Kb)
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Title BEAST_pollen_fossil_max_cred
Downloaded 10 times
Description Maximum clade credibility tree from the BEAST analysis in which the MrBayes tree topology was constrained to remain constant and the divergence times were calibrated with fossil pollen.
Download BEAST_pollen_fossil_max_cred.nex (151.2 Kb)
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Title BEAST_leaf_fossils_max_cred
Downloaded 16 times
Description Maximum clade credibility tree from the BEAST analysis in which the MrBayes tree topology was constrained to remain constant and the divergence times were calibrated with leaf fossils.
Download BEAST_leaf_fossils_max_cred.nex (152.1 Kb)
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When using this data, please cite the original publication:

Spriggs EL, Clement WL, Sweeney PW, Madriñán S, Edwards EJ, Donoghue MJ (2015) Temperate radiations and dying embers of a tropical past: the diversification of Viburnum. New Phytologist 207(2): 340-354. http://dx.doi.org/10.1111/nph.13305

Additionally, please cite the Dryad data package:

Spriggs EL, Clement WL, Sweeney PW, Madriñán S, Edwards EJ, Donoghue MJ (2015) Data from: Temperate radiations and dying embers of a tropical past: the diversification of Viburnum. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t5kf1
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