Data from: Invasion genetics of a human commensal rodent: the black rat Rattus rattus in Madagascar

Brouat C, Tollenaere C, Estoup A, Loiseau A, Sommer S, Soanandrasana R, Rahalison L, Rajerison M, Piry S, Goodman SM, Duplantier J

Date Published: June 27, 2014

DOI: http://dx.doi.org/10.5061/dryad.t66c7

 

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Title Microsatellite data (17 loci) for 38 population samples of Malagasy Rattus rattus
Downloaded 22 times
Description L1: title; L2-18: locus names; individual genotypes in a "Genepop" format. Population samples are separated by "pop" and labelled according the 4 first letters of the individual code.
Download Ratmadtotf.txt (89.71 Kb)
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Title Input datafile for the main DIYABC analyses of the paper: microsatellite and D-loop data for two Madagascan population samples
Downloaded 41 times
Description L1: title; L2-18: locus names; individual genotypes (Genepop format) for two population samples of Madagascar: DIE (Diego Suarez), north Madagascar, and MAN (Mandena), south of Madagascar
Download DieMan_dloop.txt (23.19 Kb)
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Title Code for Diyabc analyses
Downloaded 28 times
Description Reference table associated with the file DieMan_Dloop.txt and containing the code for scenarios, chosen prior distributions and summary statistics
Download Header_DieMan.txt (2.42 Kb)
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Title Assembly_Dloop
Downloaded 5 times
Description D-loop final sequence assembly for the 36 haplotypes found in Malagasy R. rattus
Download Assembly_Dloop.fas (16.01 Kb)
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Title Assembly_1762bp
Downloaded 6 times
Description 1762 bp mitochondrial sequences of the 47 haplotypes found from R. rattus samples collected in the Western Indian Ocean area
Download Assembly_1762bp.fas (93.38 Kb)
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When using this data, please cite the original publication:

Brouat C, Tollenaere C, Estoup A, Loiseau A, Sommer S, Soanandrasana R, Rahalison L, Rajerison M, Piry S, Goodman SM, Duplantier J (2014) Invasion genetics of a human commensal rodent: the black rat Rattus rattus in Madagascar. Molecular Ecology 23(16): 4153-4167. http://dx.doi.org/10.1111/mec.12848

Additionally, please cite the Dryad data package:

Brouat C, Tollenaere C, Estoup A, Loiseau A, Sommer S, Soanandrasana R, Rahalison L, Rajerison M, Piry S, Goodman SM, Duplantier J (2014) Data from: Invasion genetics of a human commensal rodent: the black rat Rattus rattus in Madagascar. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t66c7
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