Data from: Evidence of divergent selection for drought and cold tolerance at landscape and local scales in Abies alba Mill. in the French Mediterranean Alps

Roschanski AM, Csilléry K, Liepelt S, Oddou-Muratorio S, Ziegenhagen B, Huard F, Ullrich KK, Postolache D, Vendramin GG, Fady B

Date Published: December 14, 2015

DOI: http://dx.doi.org/10.5061/dryad.t671s

 

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Title common_garden_data_and_Qst-Fst_tests
Downloaded 26 times
Description A series of files containing common garden data (budburst, survival and growth) from a nursery tests (see Sagnard et al. 2002) and R scripts to perform the Qst-Fst tests with the QstFstComp package
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Title environmental_data
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Description A list of environmental variables characterizing the four studied sites from southern France (Ventoux, Lure, Issole and Vésubie)
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Title IBE_vs_IBD_tests
Downloaded 21 times
Description R scripts to perform the Mantel tests for detecting isolation-by-distance and isolation by-environment patterns using the ecodist package
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Title KASP_details
Downloaded 22 times
Description Sequences (raw data) on which primer design for KASP assay was based and SNPs therein
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Title outlier_tests
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Description Results of outlier tests using Bayescan, FLK, hFDIST and LFMM, and R scripts for running LFMM using the LEA package
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Title sampling_sites
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Description Lambert 3 coordinates and altitude of all sampled individuals
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Title STRUCTURE
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Description Shell scripts and results of the STRUCTURE analysis with K=1 to 9
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Title SNP_data
Downloaded 29 times
Description Raw SNP data called from transcriptome accession no.: JV134525–JV157085 TSA NCBI, and inferred SNP data using the software PHASE
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When using this data, please cite the original publication:

Roschanski AM, Csilléry K, Liepelt S, Oddou-Muratorio S, Ziegenhagen B, Huard F, Ullrich KK, Postolache D, Vendramin GG, Fady B (2016) Evidence of divergent selection for drought and cold tolerance at landscape and local scales in Abies alba Mill. in the French Mediterranean Alps. Molecular Ecology, 25(3): 776–794. http://dx.doi.org/10.1111/mec.13516

Additionally, please cite the Dryad data package:

Roschanski AM, Csilléry K, Liepelt S, Oddou-Muratorio S, Ziegenhagen B, Huard F, Ullrich KK, Postolache D, Vendramin GG, Fady B (2015) Data from: Evidence of divergent selection for drought and cold tolerance at landscape and local scales in Abies alba Mill. in the French Mediterranean Alps. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t671s
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