Data from: Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes

Salazar Guiral G, Cornejo-Castillo F, Borrull E, Díez-Vives C, Lara E, Vaqué D, Arrieta J, Duarte C, Gasol J, Acinas S

Date Published: September 20, 2017

DOI: https://doi.org/10.5061/dryad.t6hh8

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Title Abundance table for bathypelagic prokaryotes from Malaspina 2010 Expedition
Downloaded 10 times
Description Abundance table containing the number of reads for the Operational Taxonomic Units (OTUs) of particle-attached (PA) and free-living (FL) prokaryotes detected in 30 globally distributed stations from the Malaspina 2010 Expedition. Corresponds to 16SrDNA amplicons Illumina-based sequencing. Table is rarefied to 10,617 reads/sample. Columns are the samples; Rows are the OTUs. Taxonomy is attached after the last sample.
Download OTUtable_Salazar_etal_2015_Molecol.txt (1.324 Mb)
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Title Auxiliary data for the samples
Downloaded 4 times
Description Auxiliary data containing information on the station, size-fraction, date of sampling, ocean, depth and coordinates.
Download Metadata_Salazar_etal_2015_Molecol.txt (3.666 Kb)
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Title Phylogeny of the OTUs representative sequences
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Description Phylogeny reconstruction of the OTUs. Newick format. Constructed with RAxML by the evolutionary placement of short sequences within an initial phylogeny of close full length sequences from SILVA database (See details in M&M).
Download FinalTree_Salazar_etal_2015_Molecol.nwk (193.2 Kb)
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Title Alignment used for phylogeny construction
Downloaded 3 times
Description Alignment used for the phylogenetic reconstruction.
Download Alignment_Salazar_etal_2015_Molecol.phylip (3.656 Mb)
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When using this data, please cite the original publication:

Salazar G, Cornejo-Castillo FM, Borrull E, Díez-Vives C, Lara E, Vaqué D, Arrieta JM, Duarte CM, Gasol JM, Acinas SG (2015) Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes. Molecular Ecology 24(22): 5692-5706. https://doi.org/10.1111/mec.13419

Additionally, please cite the Dryad data package:

Salazar Guiral G, Cornejo-Castillo F, Borrull E, Díez-Vives C, Lara E, Vaqué D, Arrieta J, Duarte C, Gasol J, Acinas S (2015) Data from: Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes. Dryad Digital Repository. https://doi.org/10.5061/dryad.t6hh8
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