Data from: Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows

Tapio I, Fischer D, Blasco L, Tapio M, Wallace RJ, Bayat AR, Ventto L, Kahala M, Negussie E, Shingfield KJ, Vilkki J

Date Published: August 24, 2017

DOI: https://doi.org/10.5061/dryad.t6t0q

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Title Bacteria fasta files
Downloaded 5 times
Description File containing demultiplexed bacteria 16S rRNA gene (107f-530r) fasta files for individual animals. Barcodes, forward and reverse primer sequences are trimmed. Primer sequences and metadata for each sample are provided in the file 'Sequence metadata.xlsx', that is also part of this Dryad data package.
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Title Archaea fasta files
Downloaded 4 times
Description File containing demultiplexed archaea 16S rRNA gene (V9) fasta files for individual animals. Barcodes, forward and reverse primer sequences are trimmed. Primer sequences and metadata for each sample are provided in the file 'Sequence metadata.xlsx', that is also part of this Dryad data package.
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Title Ciliate protozoa fasta files
Downloaded 5 times
Description File containing demultiplexed ciliate protozoa 18S rRNA gene (316f-539r) fasta files for individual animals. Barcodes, forward and reverse primer sequences are trimmed. Primer sequences and metadata for each sample are provided in the file 'Sequence metadata.xlsx', that is also part of this Dryad data package.
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Title Fungi fasta files
Downloaded 4 times
Description File containing demultiplexed anaerobic fungi ITS1 region fasta files for individual animals. Barcodes, forward and reverse primer sequences are trimmed. Primer sequences and metadata for each sample are provided in the file 'Sequence metadata.xlsx', that is also part of this Dryad data package.
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Title Sequence metadata
Downloaded 14 times
Download Sequence metadata.xlsx (17.24 Kb)
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When using this data, please cite the original publication:

Tapio I, Fischer D, Blasco L, Tapio M, Wallace RJ, Bayat AR, Ventto L, Kahala M, Negussie E, Shingfield KJ, Vilkki J (2017) Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows. PLOS ONE 12(7): e0180260. https://doi.org/10.1371/journal.pone.0180260

Additionally, please cite the Dryad data package:

Tapio I, Fischer D, Blasco L, Tapio M, Wallace RJ, Bayat AR, Ventto L, Kahala M, Negussie E, Shingfield KJ, Vilkki J (2017) Data from: Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows. Dryad Digital Repository. https://doi.org/10.5061/dryad.t6t0q
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