Data from: "Transcriptomic resources for three populations of Conus miliaris (Mollusca: Conidae) from Easter Island, American Samoa and Guam" in Genomic Resources Notes Accepted 1 August 2014-30 September 2014

Weese DA, Duda TF

Date Published: December 4, 2014

DOI: http://dx.doi.org/10.5061/dryad.t74q4

 

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Title Conus_miliaris_TRI_6_14.fa
Downloaded 21 times
Description Transcript assembly for Conus miliaris. Assembly consists of 22 individuals collected from Easter Island, Guam and American Samoa. Assembly was created from 100 bp paired-end reads. Reads were first normalized then assembled with Trinity (version 20140413p1). Tissue source: venom ducts.
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Title American_samoa_TRI_6_14.fa
Downloaded 10 times
Description Transcript assembly for 6 individuals of Conus miliaris collected from American Samoa. Assembly was created from 87,201,606 100 bp paired-end reads. Transcripts were assembled with Trinity (version 20140413p1). Tissue source: venom ducts.
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Title Easter_Island_TRI_6_14.fa
Downloaded 9 times
Description Transcript assembly for 8 individuals of Conus miliaris collected from Easter Island. Assembly was created from 131,525,916 100-bp paired-end reads. Transcripts were assembled with Trinity (version 20140413p1). Tissue source: venom ducts.
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Title Guam_TRI_6_14.fa
Downloaded 11 times
Description Transcript assembly for 8 individuals of Conus miliaris collected from Guam. Assembly was created from 130,566,380 100-bp paired-end reads. Transcripts were assembled with Trinity (version 20140413p1). Tissue source: venom ducts.
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Title American_Samoa_blastx_annotation
Downloaded 56 times
Description Parsed BLASTx report for C. miliaris from American Samoa. Transcripts were seearched against local databases of non-redundant conotoxin and conotoxin signal sequences downloaded from the Conoserver database, annotated proteins from two mollusc species available on the NCBI Unigene database (Aplysia californica and Lottia gigantea), all Conus related proteins downloaded from NCBI's nr database as well as the Swiss-Prot database. Matches with an e-value < 10-5 were retained.
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Title Conus_miliaris_blastx_annotation
Downloaded 44 times
Description Parsed BLASTx report for C. miliaris. Transcripts were seearched against local databases of non-redundant conotoxin and conotoxin signal sequences downloaded from the Conoserver database, annotated proteins from two mollusc species available on the NCBI Unigene database (Aplysia californica and Lottia gigantea), all Conus related proteins downloaded from NCBI's nr database as well as the Swiss-Prot database. Matches with an e-value < 10-5 were retained.
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Title Easter_Island_blastx_annotation
Downloaded 36 times
Description Parsed BLASTx report for C. miliaris from Easter Island. Transcripts were seearched against local databases of non-redundant conotoxin and conotoxin signal sequences downloaded from the Conoserver database, annotated proteins from two mollusc species available on the NCBI Unigene database (Aplysia californica and Lottia gigantea), all Conus related proteins downloaded from NCBI's nr database as well as the Swiss-Prot database. Matches with an e-value < 10-5 were retained.
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Title Guam_blastx_annotation
Downloaded 42 times
Description Parsed BLASTx report for C. miliaris from Guam. Transcripts were seearched against local databases of non-redundant conotoxin and conotoxin signal sequences downloaded from the Conoserver database, annotated proteins from two mollusc species available on the NCBI Unigene database (Aplysia californica and Lottia gigantea), all Conus related proteins downloaded from NCBI's nr database as well as the Swiss-Prot database. Matches with an e-value < 10-5 were retained.
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Title Conus_miliaris_individual_expression_files.tar
Downloaded 7 times
Description Annotated tab-delimited expression count files (raw counts and FPKM values) with the number of reads mapping back to each transcript for all transcripts as well as toxin related only transcripts for all Conus miliaris individuals.
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Title Conus_miliaris_populations_expression_files.tar
Downloaded 11 times
Description Annotated tab-delimited expression count files (raw counts and FPKM values) with the number of reads mapping back to each transcript for all transcripts as well as toxin related only transcripts for all populations (Easter Island, Guam, and American Samoa) of Conus miliaris.
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Title Conus_miliaris_SNPs.tar
Downloaded 11 times
Description VCF file of 585,736 high-quality single nucleotide polymorphisms (SNPs) identified from 22 C. miliaris individuals from Easter Island, Guam and American Samoa.
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When using this data, please cite the original publication:

Genomic Resources Development Consortium, Arthofer W, Banbury BL, Carneiro M, Cicconardi F, Duda TF, Harris RB, Kang DS, Leaché AD, Nolte V, Nourisson C, Palmieri N, Schlick-Steiner BC, Schlötterer C, Sequeira F, Sim C, Steiner FM, Callinoto M, Weese DA (2015) Genomic Resources Notes Accepted 1 August 2014-30 September 2014. Molecular Ecology Resources 15(1): 228-229. http://dx.doi.org/10.1111/1755-0998.12340

Additionally, please cite the Dryad data package:

Weese DA, Duda TF (2014) Data from: "Transcriptomic resources for three populations of Conus miliaris (Mollusca: Conidae) from Easter Island, American Samoa and Guam" in Genomic Resources Notes Accepted 1 August 2014-30 September 2014. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t74q4
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