Data from: A phylogenomic analysis of turtles

Crawford NG, Parham JF, Sellas AB, Faircloth BC, Glenn TC, Papefuss TJ, Henderson JB, Hansen MH, Simison WB

Date Published: November 4, 2014

DOI: http://dx.doi.org/10.5061/dryad.t77q4

 

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Title Incomplete dataset - concatenated alignments
Downloaded 38 times
Description Dataset used to run analysis with MrBayes. Up to 25% missing data is allowed at each locus.
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Title Complete dataset - concatenated alignments
Downloaded 36 times
Description Dataset used to run analysis with MrBayes. No missing data (e.g., taxa) was present at any locus.
Download complete_dataset2_MrB500k.nex (10.48 Mb)
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Title Complete dataset - individual mafft alignments
Downloaded 34 times
Download complete_dataset2_mafft-nexus.tar.gz (549.2 Kb)
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Title Incomplete dataset - individual mafft alignments
Downloaded 26 times
Download incomplete_dataset2_mafft-nexus.tar.gz (4.666 Mb)
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Title MrBayes tree - incomplete dataset
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Download incomplete_dataset2_partitioned_MrB2_500k...al.tre (18.27 Kb)
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Title MrBayes tree - complete dataset
Downloaded 27 times
Download complete_dataset2_MrB500_final.tre (18.3 Kb)
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Title RAxML tree - complete dataset
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Download complete_dataset2_clean_RAxML10k.tre (6.662 Kb)
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Title RAxML tree - incomplete dataset
Downloaded 17 times
Description Note: 'autoMRE' was used to determine number of bootstrap replicates to run.
Download incomplete_dataset2_RAx_autoMRE.tre (6.594 Kb)
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Title Phybase trees - complete dataset
Downloaded 33 times
Description Genetrees, bootstraps, consensus trees
Download complete.phybase.zip (53.96 Kb)
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Title Phybase trees - incomplete dataset
Downloaded 30 times
Description genetrees, bootstrap trees, consensus trees
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When using this data, please cite the original publication:

Crawford NG, Parham JF, Sellas AB, Faircloth BC, Glenn TC, Papefuss TJ, Henderson JB, Hansen MH, Simison WB (2015) A phylogenomic analysis of turtles. Molecular Phylogenetics and Evolution 83: 250-257. http://dx.doi.org/10.1016/j.ympev.2014.10.021

Additionally, please cite the Dryad data package:

Crawford NG, Parham JF, Sellas AB, Faircloth BC, Glenn TC, Papefuss TJ, Henderson JB, Hansen MH, Simison WB (2014) Data from: A phylogenomic analysis of turtles. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t77q4
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