Data from: Thermal stress and predation risk trigger distinct transcriptomic responses in the intertidal snail Nucella lapillus

Chu ND, Miller LP, Kaluziak ST, Trussell GC, Vollmer SV

Date Published: November 13, 2014

DOI: http://dx.doi.org/10.5061/dryad.t9j07

 

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Title Raw Read Count Expression Data for ND Chu et al 2014
Downloaded 16 times
Description Total raw read count expression data from Nucella lapillus from the accompanying publication. This file was created by eXpress (http://bio.math.berkeley.edu/eXpress/) for analysis in DEseq2. The sample names are as in the publication. Each row represents a transcript, as assembled in Trinity (see publication for transcriptome assembly accession; http://trinityrnaseq.sourceforge.net/). Experimental snails were collected from near Nahant, Massachusetts, USA.
Download NChuetal2014ReadCountTable.txt (4.352 Mb)
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Title Express Results File AC_006
Downloaded 8 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample AC_006, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download AC_006results.xprs (14.07 Mb)
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Title Express Parameters File AC_006
Downloaded 2 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample AC_006, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download AC_006params.xprs (278.5 Kb)
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Title Express Results File AC_008
Downloaded 6 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample AC_006, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download AC_008results.xprs (14.16 Mb)
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Title Express Parameters File AC_008
Downloaded 2 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample AC_008, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download AC_008params.xprs (278.5 Kb)
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Title Express Results File AC_43
Downloaded 6 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample AC_43, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download AC_43results.xprs (14.05 Mb)
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Title Express Parameters File AC_43
Downloaded 6 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample AC_43, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download AC_43params.xprs (322.0 Kb)
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Title Express Results File AC_42
Downloaded 5 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample AC_42, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download AC_42results.xprs (14.19 Mb)
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Title Express Parameters File AC_42
Downloaded 3 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample AC_42, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download AC_42params.xprs (322.0 Kb)
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Title Express Results File ANC_003
Downloaded 8 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample ANC_003, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download ANC_003results.xprs (14.27 Mb)
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Title Express Parameters File ANC_003
Downloaded 5 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample ANC_003, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download ANC_003params.xprs (278.5 Kb)
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Title Express Results File ANC_34
Downloaded 5 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample ANC_34, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download ANC_34results.xprs (14.41 Mb)
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Title Express Parameters File ANC_34
Downloaded 4 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample ANC_34, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download ANC_34params.xprs (322.0 Kb)
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Title Express Results File ANC_41
Downloaded 5 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample ANC_41, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download ANC_41results.xprs (14.39 Mb)
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Title Express Parameters File ANC_41
Downloaded 2 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample ANC_41, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download ANC_41params.xprs (322.0 Kb)
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Title Express Results File HNC_31
Downloaded 2 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample HNC_31, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download HNC_31results.xprs (14.31 Mb)
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Title Express Parameters File HNC_31
Downloaded 5 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample HNC_31, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download HNC_31params.xprs (322.0 Kb)
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Title Express Results File HNC_37
Downloaded 7 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample HNC_37, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download HNC_37results.xprs (14.33 Mb)
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Title Express Parameters File HNC_37
Downloaded 7 times
Description Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample HNC_37, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
Download HNC_37params.xprs (322.0 Kb)
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When using this data, please cite the original publication:

Chu ND, Miller LP, Kaluziak ST, Trussell GC, Vollmer SV (2014) Thermal stress and predation risk trigger distinct transcriptomic responses in the intertidal snail Nucella lapillus. Molecular Ecology 23(24): 6104-6113. http://dx.doi.org/10.1111/mec.12994

Additionally, please cite the Dryad data package:

Chu ND, Miller LP, Kaluziak ST, Trussell GC, Vollmer SV (2014) Data from: Thermal stress and predation risk trigger distinct transcriptomic responses in the intertidal snail Nucella lapillus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.t9j07
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