Data from: Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria

Sagova-Mareckova M, Ulanova D, Sanderova P, Omelka M, Kamenik Z, Olsovska J, Kopecky J

Date Published: April 1, 2015

DOI: http://dx.doi.org/10.5061/dryad.td742

 

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Title Supporting information to the Figure 1
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Description An alignment of partial 16S rRNA gene sequences of the isolated strains examined in the study. Phylograms constructed by neighbor-joining method based on Jukes-Cantor distance matrices calculated from the initial alignment, and from its 1000 bootstrap replicates.
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Title Supporting infomation to the Figure 2.
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Description Phylogenetic analysis of 17 putative ABC transporters from the isolated strains with 23 reference sequences of ABC transporters described in actinobacteria. An alignment of amino-acid ABC transporter sequences. The phylogenies inferred by Bayesian analysis, maximum-likelihood and neighbor-joining methods.
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Title Supporting information to the Figure 3
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Description Phylogenetic analysis of 7 putative erm genes from the isolated strains obtained in the study with 50 actinobacterial described or putative erm genes. An alignment of the Erm protein sequences. The phylogenies inferred by Bayesian analysis, maximum-likelihood and neighbor-joining methods.
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Title Supporting information to the Figure 4
Downloaded 29 times
Description Phylogenetic relationships of 47 collection strains harboring erm resistance genes. An alignment of 16S rRNA gene sequences. A phylogram constructed by neighbor-joining method based on Jukes-Cantor distance matrices calculated from 1000 bootstrap replicates of the alignment.
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When using this data, please cite the original publication:

Sagova-Mareckova M, Ulanova D, Sanderova P, Omelka M, Kamenik Z, Olsovska J, Kopecky J (2015) Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria. BMC Microbiology 15:81. http://dx.doi.org/10.1186/s12866-015-0416-6

Additionally, please cite the Dryad data package:

Sagova-Mareckova M, Ulanova D, Sanderova P, Omelka M, Kamenik Z, Olsovska J, Kopecky J (2015) Data from: Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.td742
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