Data from: Rapid diversification associated with ecological specialization in Neotropical Adelpha butterflies

Ebel ER, DaCosta JM, Sorenson MD, Hill RI, Briscoe AD, Willmott KR, Mullen SP

Date Published: March 30, 2015

DOI: http://dx.doi.org/10.5061/dryad.tf704

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Haplotypes for all loci and individuals
Downloaded 15 times
Description Output of the final step of the pyRAD software pipeline (Eaton and Ree, 2013). File contains both haplotypes for 125 individuals at 144,699 loci. This is the "raw" data set subjected to additional filtering (see scripts) before phylogenetic analysis.
Download all_haplotypes.txt (300.9 Mb)
Details View File Details
Title Partitioning Scripts
Downloaded 31 times
Description This folder contains a short pipeline (3 Python scripts) for partitioning loci haplotype data by the number of individuals without data. A README file explains how to use the scripts.
Download Partitioning.zip (3.978 Kb)
Details View File Details
Title Phylogenetic Trees
Downloaded 33 times
Description Readable trees (.tre) corresponding to paper figures as follows: RAxML_concat--Figure 2; BEAST--Figure 3; RAxML_presabs, RAxML_SNP, and NJst--Figure S3; RAxML_PartitionX--Figure S4.
Download Tree_files.zip (51.32 Kb)
Details View File Details
Title Raw_Reads_AGTCAG
Downloaded 32 times
Description Raw reads with index AGTCAG.
Download AGTCAG.fastq.zip (6.341 Gb)
Details View File Details
Title Raw_Reads_CTGAGA
Downloaded 32 times
Description Raw reads with index CTGAGA.
Download CTGAGA.fastq.zip (6.449 Gb)
Details View File Details
Title Raw_Reads_GACTTC
Downloaded 30 times
Description Raw reads with index GACTTC.
Download GACTTC.fastq.zip (6.840 Gb)
Details View File Details
Title Raw_Reads_TCAGCT
Downloaded 28 times
Description Raw reads with index TCAGCT.
Download TCAGCT.fastq.zip (8.000 Gb)
Details View File Details

When using this data, please cite the original publication:

Ebel ER, DaCosta JM, Sorenson MD, Hill RI, Briscoe AD, Willmott KR, Mullen SP (2015) Rapid diversification associated with ecological specialization in Neotropical Adelpha butterflies. Molecular Ecology 24(10): 2392-2405. http://dx.doi.org/10.1111/mec.13168

Additionally, please cite the Dryad data package:

Ebel ER, DaCosta JM, Sorenson MD, Hill RI, Briscoe AD, Willmott KR, Mullen SP (2015) Data from: Rapid diversification associated with ecological specialization in Neotropical Adelpha butterflies. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.tf704
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: