Data from: Contemporary genetic structure of an endemic freshwater turtle reflects Miocene orogenesis of New Guinea.

Georges A, Zhang X, Unmack P, Reid BN, Le M, McCord WP

Date Published: August 28, 2013

DOI: http://dx.doi.org/10.5061/dryad.tf8q1

 

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Title full_gene_set_12S_16S_CO1_CytB_phylogeny
Downloaded 11 times
Description This nexus file contains the sequence data for the full gene set (ND4, CR, 12s, 16s,Cox1, Cytb) used to confirm major nodes and refine bootstrap support for Elseya novaeguineae, with E. branderhorsti as outgroup.
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Title reduced_gene_set_CR_ND4_phylogeny
Downloaded 6 times
Description This nexus file contains the sequence data for the reduced gene set (ND4 and CR) used to recover the phylogeny for mitochondrial haplotypes of Elseya novaeguineae, with E. branderhorsti haplotypes as outgroup.
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Title nuclear_emydura_group_beast_input
Downloaded 6 times
Description Nuclear data in nexus format used as the input for the Beast analysis.
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Title mtdna_emydura_group_beast_input
Downloaded 4 times
Description Mitochondrial data in nexus format used as the input for the Beast analysis.
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Title emydura_group_beast_trees_comb_1-7-5_output
Downloaded 7 times
Description Maximum clade credibility tree saved from figtree from the combined output of our Beast runs.
Download emydura_group_beast_trees_comb_1-7-5_output.nex (18.35 Kb)
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Title emydura.group
Downloaded 11 times
Description XML file used in the BEAST molecular clock analysis using only the Redbank Plains fossil calibration.
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When using this data, please cite the original publication:

Georges A, Zhang X, Unmack P, Reid BN, Le M, McCord WP (2014) Contemporary genetic structure of an endemic freshwater turtle reflects Miocene orogenesis of New Guinea. Biological Journal of the Linnean Society 111(1): 192-208. http://dx.doi.org/10.1111/bij.12176

Additionally, please cite the Dryad data package:

Georges A, Zhang X, Unmack P, Reid BN, Le M, McCord WP (2013) Data from: Contemporary genetic structure of an endemic freshwater turtle reflects Miocene orogenesis of New Guinea. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.tf8q1
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