Data from: Anthropogenic extinction dominates Holocene declines of West Indian mammals

Cooke SB, Dávalos LM, Mychajliw AM, Turvey ST, Upham NS

Date Published: July 14, 2017

DOI: http://dx.doi.org/10.5061/dryad.tj4p5

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Date model
Downloaded 1 time
Description Script for meta-analyses of West Indian extinct mammal dates .Files required in same folder # data: fossil.csv archeo.csv # jags models: model.txt model0.txt model2.txt model3.txt model4.txt
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Clean list
Downloaded 2 times
Description Script for summarizing data on West Indian extinct mammal dates # Files required in same folder # data: fossil.csv archeo.csv list.csv short_list_edited.csv cuba_silva2007.csv # data: hispaniola_sam.csv puerto_rico_sam.csv
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Plot models
Downloaded 1 time
Description Script to make plots from meta-analyses of West Indian extinct mammal dates # # Files required in same folder # prior results: dates.Rdata
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title List of dated fossils
Downloaded 1 time
Description Compiled from literature and calibrated.
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Jags model 3
Downloaded 1 time
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Jags model 4
Downloaded 1 time
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Edited short list
Downloaded 1 time
Description List of species, after manual correction, needed to run clean_list_dryad.R
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Jags model 2
Downloaded 1 time
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title List of dated archeological sites
Downloaded 1 time
Description Compiled from literature and calibrated.
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title List of species from Hispaniola
Downloaded 1 time
Description Based on literature evaluation by Sam Turvey.
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title List of species from Cuba
Downloaded 1 time
Description Based on Compendio de los MamÍferos Terrestres Autóctonos de Cuba Vivientes y Extinguidos, by G. Silva Taboada, W. Suarez Duque, and S. Diaz Franco 2007. Compendio de los MamÍferos Terrestres Autóctonos de Cuba Vivientes y Extinguidos. Museo Nacional de Historia Natural. Habana, Cuba
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Baseline species list
Downloaded 1 time
Description Based on Dávalos LM, Turvey S. 2012. West Indian Mammals: The Old, the New, and the Recently Extinct In Bones, Clones, and Biomes: An Extended History of Recent Neotropical Mammals, ed. BD Patterson, LP Acosta, pp. 157-202. Chicago: University of Chicago Press
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Jags model 0
Downloaded 1 time
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Jags model 1
Downloaded 1 time
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Script for making Figure 3
Downloaded 1 time
Description ### # Scripts for Fig 3 in Cooke et al. 2017 AREES ###
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Table of body masses
Downloaded 1 time
Description For figure 3
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Table of evolutionary distance
Downloaded 1 time
Description For figure 3
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Table of invasive species
Downloaded 1 time
Description For figure 3
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Table of evolutionary distance
Downloaded 1 time
Description For figure 3, includes all mammals
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Table of body missing species
Downloaded 1 time
Description For figure 3
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Phylogeny used for figure 3
Downloaded 1 time
Description Dated phylogeny including extinct mammals
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.
Title Functions called for figure 3
Downloaded 1 time
Description Needed to run Fig3_phylo_bodyMass_scripts_final.R
Details View File Details
At the request of the author, this item is embargoed until the associated publication appears.

When using this data, please cite the original publication:

Citation is not yet available for this publication from Annual Review of Ecology, Evolution, and Systematics. It will become available shortly after the publication appears.

Additionally, please cite the Dryad data package:

Cooke SB, Dávalos LM, Mychajliw AM, Turvey ST, Upham NS (2017) Data from: Anthropogenic extinction dominates Holocene declines of West Indian mammals. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.tj4p5
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: