Data from: Ancient hybridization and genomic stabilization in a swordtail fish

Schumer M, Cui R, Powell DL, Rosenthal GG, Andolfatto P

Date Published: January 7, 2016

DOI: http://dx.doi.org/10.5061/dryad.tm47d

 

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Title create_insnp_oneindiv_GATK3_4_v7
Downloaded 21 times
Description script to generate insnp file from GATK gVCF files. Must be run on each chromosome separately.
Download create_insnp_oneindiv_GATK3_4_v7.pl (11.68 Kb)
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Title 5Xipho.fasta.reduced
Downloaded 7 times
Description Whole genome alignments used in analysis.
Download 5Xipho.fasta.reduced.phy.gz (822.4 Mb)
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Title RAxML_bestTree
Downloaded 8 times
Description RAxML results file
Download RAxML_bestTree.5spp (213 bytes)
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Title Xiphophorus_maculatus_LG.Xipmac4.4.2.81
Downloaded 8 times
Description modified gtf file for the X. maculatus genome used in analysis
Download Xiphophorus_maculatus_LG.Xipmac4.4.2.81.gtf (189.2 Mb)
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Title RAxML_bootstrap
Downloaded 13 times
Description bootstrap results for RAxML analysis
Download RAxML_bootstrap.5spp (4.8 Kb)
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When using this data, please cite the original publication:

Schumer M, Cui R, Powell DL, Rosenthal GG, Andolfatto P (2016) Ancient hybridization and genomic stabilization in a swordtail fish. Molecular Ecology 25(11): 2661–2679. http://dx.doi.org/ 10.1111/mec.13602

Additionally, please cite the Dryad data package:

Schumer M, Cui R, Powell DL, Rosenthal GG, Andolfatto P (2016) Data from: Ancient hybridization and genomic stabilization in a swordtail fish. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.tm47d
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