Data from: Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes

Fortunato SAV, Adamski M, Ramos OM, Leininger S, Liu J, Ferrier DEK, Adamska M

Date Published: October 24, 2014

DOI: http://dx.doi.org/10.5061/dryad.tn0f3

 

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Title Sycon ciliatum genome
Downloaded 52 times
Description Sycon ciliatum genome assembly freeze 02.08.2013. The assembly was generated using two (360bp and 530bp) paired-end libraries and several mate-pair libraries ranging from 2.0 to 9.0 kb. Assembly was performed using SOAPdenovo2 and scaffolding using SSPACE v2.2. Genomic scaffolds of sponge origin (as opposed to those derived from associated organisms) were identified by aligning the resulting assembly to reads from an Illumina sequenced library obtained from laboratory grown, eukaryotic- contamination free juveniles.
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Title Sycon ciliatum coding sequences
Downloaded 17 times
Description Sycon ciliatum coding sequences. De-novo assembly of transcriptome and identification of coding sequences was performed with Trinity pipeline using an extensive collection of RNA-Seq libraries derived from larvae, juveniles, non-reproductive adults, adults containing oocytes and embryos, and regenerating adult tissue. The coding sequences were aligned on the Sycon ciliatum genome to identify genes and sort out sequences of non-sponge origin.
Download sycon.cds.fa.gz (23.21 Mb)
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Title Sycon ciliatum proteins
Downloaded 21 times
Description Sycon ciliatum proteins, translations of Sycon ciliatum coding sequences.
Download sycon.pep.fa.gz (15.18 Mb)
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Title Leucosolenia complicata coding sequences
Downloaded 17 times
Description Leucosolenia complicata coding sequences. De-novo assembly of transcriptome and identification of coding sequences was performed with Trinity pipeline using RNA-Seq libraries derived from adult tissues containing oocytes and a variety of embryonic stages. Leucosolenia 'genes' were artificially created without use of a genome, by clustering of coding sequences sharing identical fragments.
Download leucosolenia.cds.fa.gz (27.90 Mb)
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Title Leucosolenia complicata proteins
Downloaded 18 times
Description Leucosolenia complicata proteins, translations of Leucosolenia complicata coding sequences.
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When using this data, please cite the original publication:

Fortunato SAV, Adamski M, Ramos OM, Leininger S, Liu J, Ferrier DEK, Adamska M (2014) Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Nature 514: 620–623. http://dx.doi.org/10.1038/nature13881

Additionally, please cite the Dryad data package:

Fortunato SAV, Adamski M, Ramos OM, Leininger S, Liu J, Ferrier DEK, Adamska M (2014) Data from: Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.tn0f3
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