Data from: ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

Yu G, Smith DK, Zhu H, Guan Y, Lam TT

Date Published: August 19, 2016

DOI: http://dx.doi.org/10.5061/dryad.v15v0

 

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Title MCC_FluA_H3
Downloaded 42 times
Description Time-scaled phylogenetic tree of H3 influenza viruses inferred by BEAST using molecular clock model.
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Title rst
Downloaded 29 times
Description Output file of CODEML inferring ancestral sequences of H3 influenza viruses using codon model.
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Title mlc
Downloaded 25 times
Description Output file of CODEML estimating selection pressure using codon model.
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Title NAG_inHA1
Downloaded 25 times
Description The predicted number of N-linked glycosylation sites in the hemagglutinin proteins of H3 influenza viruses.
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Title sites
Downloaded 27 times
Description The sequence sites selected to display amino acid substitutions on the phylogenetic tree of H3 influenza viruses.
Download sites.txt (315 bytes)
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Title Genotype
Downloaded 31 times
Description Genotype table of the H3 influenza viruses.
Download Genotype.txt (5.311 Kb)
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When using this data, please cite the original publication:

Yu G, Smith DK, Zhu H, Guan Y, Lam TT (2016) ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution 8(1): 28-36. http://dx.doi.org/10.1111/2041-210x.12628

Additionally, please cite the Dryad data package:

Yu G, Smith DK, Zhu H, Guan Y, Lam TT (2016) Data from: ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.v15v0
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