Data from: Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale

Putman AI, Tredway LP, Carbone I

Date Published: June 10, 2015

DOI: http://dx.doi.org/10.5061/dryad.v56g3

 

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Title Size and features of Ascomycota mating type loci
Downloaded 10 times
Description Cursory literature review of the size and features of Ascomycota mating type loci
Download Putman_MAT-Sh_FGB_MAT-locus-lit-search.xlsx (48.71 Kb)
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Title Annotation of the Sclerotinia homoeocarpa mating type locus
Downloaded 7 times
Description RepeatModeler, RepeatMasker, and GeneMark commands; repeat library; and gene models output from GeneMark-ES v2.3c beta
Download FGB-14-335R2_Sh-MAT-locus_annotation.zip (2.643 Mb)
Download README.txt (4.306 Kb)
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Title Analysis of worldwide distribution of Sclerotinia homoeocarpa mating type genes
Downloaded 6 times
Description Analysis of clone-corrected ratios of mating type using binomial tests with simple continuity correction
Download Putman_MAT-Sh_FGB_Tbl-4-5_MAT-distribution....xlsx (53.07 Kb)
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Title Analysis of duplicated MAT1-2-1 of Sclerotinia homoeocarpa
Downloaded 2 times
Description Amino acid sequences, alignments, and MetaPIGA run parameters used to compare the truncated copy of MAT1-2-1 found outside the mating type locus of the MAT1-1 Sclerotinia homoeocarpa strain MB-01
Download FGB-14-335R2_Sh-MAT-locus_duplicated.zip (7.463 Kb)
Download README.txt (4.306 Kb)
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Title Phylogeny of the mating type and flanking genes.
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Description Sequences, alignments, and MetaPIGA run files used to infer the phylogenies of the mating type (MAT1-2-1, MAT1-2-4, MAT1-1-5, and MAT1-1-1) and flanking (APN2 and SLA2) genes.
Download FGB-14-335R2_Sh-MAT-locus_phylogeny.zip (202.6 Kb)
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Title Repeat features of the Sclerotinia homoeocarpa mating type locus
Downloaded 4 times
Description Short sequence segments used to analyze the inverted and direct repeat features bordering the mating type idiomorphs.
Download FGB-14-335R2_Sh-MAT-locus_repeat_features.zip (2.523 Kb)
Download README.txt (4.306 Kb)
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Title Sanger sequencing reads
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Description Sanger reads used to sequence the mating type loci.
Download sequencing_reads.zip (32.48 Mb)
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When using this data, please cite the original publication:

Putman AI, Tredway LP, Carbone I (2015) Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale. Fungal Genetics and Biology 81: 25-40. http://dx.doi.org/10.1016/j.fgb.2015.05.012

Additionally, please cite the Dryad data package:

Putman AI, Tredway LP, Carbone I (2015) Data from: Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.v56g3
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