Data from: Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum)

Wilton PR, Sloan DB, Logsdon JM, Doddapaneni H, Neiman M

Date Published: November 21, 2012

DOI: http://dx.doi.org/10.5061/dryad.v72m2

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title P. antipodarum 454 read sequences
Downloaded 29 times
Description Read sequences from 454 sequencing of two sexual and two asexual lineages of the New Zealand snail Potamopyrgus antipodarum. RNA was extracted from four independently-isolated P. antipodarum lineages descended from wild-caught females originally sampled from three New Zealand South Island lakes: Lake Alexandrina (one sexual diploid lineage and one asexual triploid lineage), Lady Lake (sexual diploid), and Lake Mapourika (asexual triploid). Each lineage was represented by four arbitrarily selected adult females. For details on extraction and sequencing efforts, see the associated publication.
Download P_antipodarum_454_reads_FASTA.tar.gz (225.2 Mb)
Details View File Details
Title P. antipodarum contig annotations
Downloaded 16 times
Description BLAST results and Gene Ontology annotations of contig sequences from transcriptome sequencing of two sexual and two asexual lineages of New Zealand snail Potamopyrgus antipodarum. BLAST annotations were made using the Tera-BLASTX implementation of the BLASTX algorithm. GO annotations were made using the software BLAST2GO; BLAST2GO was provided with BLASTX results of a search against the NCBI ns database, and default values were used for all cutoff parameters.
Download P_antipodarum_annotations.tar.gz (88.13 Mb)
Details View File Details
Title P. antipodarum contig assemblies
Downloaded 43 times
Description Assemblies of reads from the transcriptome sequencing of two sexual and two asexual lineages of New Zealand snail Potamopyrgus antipodarum. Read assembly was carried out using the sotware MIRA3. The assemblies are in .ace format.
Download P_antipodarum_contig_assemblies.tar.gz (38.26 Mb)
Download README.txt (232 bytes)
Details View File Details
Title P. antipodarum contig sequences
Downloaded 16 times
Description Assembled contig sequences from the 454 transcriptome sequencing of two sexual and two asexual lineages of New Zealand snail Potamopyrgus antipodarum. Contig sequences were produced by the software MIRA3.
Download P_antipodarum_contig_sequences.fasta (23.13 Mb)
Details View File Details
Title P. antipodarum microsatellite loci
Downloaded 46 times
Description These files describe the locations (flanking sequence) of putative microsatellite loci in the New Zealand snail Potamopyrgus antipodarum. The loci were identified by scanning contig sequences from a 454 transcriptome sequencing experiment with the software MSATCOMMANDER.
Download README.txt (2.024 Kb)
Download P_antipodarum_microsatellites.tar.gz (4.548 Mb)
Details View File Details
Title P. antipodarum SNP loci
Downloaded 43 times
Description Locations of SNP loci from 454 transcriptome sequencing of two sexual and two asexual lineages the New Zealand snail Potamopyrgus antipodarum. Positions of SNPs are relative to contig sequences assembled in this sequencing experiment. The software MIRA3 was used for both read alignment (i.e., contig generation) and SNP discovery. Both padded and unpadded positions are given.
Download P_antipodarum_SNPs.tar.gz (1.601 Mb)
Download README.txt (646 bytes)
Details View File Details

When using this data, please cite the original publication:

Wilton PR, Sloan DB, Logsdon JM, Doddapaneni H, Neiman M (2012) Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum). Molecular Ecology Resources 13(2): 289–294. http://dx.doi.org/10.1111/1755-0998.12051

Additionally, please cite the Dryad data package:

Wilton PR, Sloan DB, Logsdon JM, Doddapaneni H, Neiman M (2012) Data from: Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.v72m2
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: