Data from: Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila

Bergland AO, Behrman EL, O'Brien KR, Schmidt PS, Petrov DA

Date Published: December 10, 2014

DOI: http://dx.doi.org/10.5061/dryad.v883p

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Liftover file to convert D. simulans version 2 genome coordinates to D. melanogaster v5 (dm3) coordinates
Downloaded 13 times
Description Liftover file for use with UCSC liftOver utility for converting genomic coordinates of the version 2 D. simulans genome (Hu et al 2012) to version 5 (dm3) D. melanogaster genome.
Download ds2_to_dm3.liftOver.gz (2.807 Mb)
Details View File Details
Title Anntotated VCF file
Downloaded 37 times
Description Annotated VCF file containing allele frequency and read depths of the 14 samples described in Bergland et al. Annotations include p- and q-values from models of seasonality and clinality; genic annotations; average frequencies; and, quality filters. This VCF file only contains SNPs with average minor allele frequency > 0.15.
Download 6d_v7.3_output.vcf.gz (109.4 Mb)
Details View File Details

When using this data, please cite the original publication:

Bergland AO, Behrman EL, O'Brien KR, Schmidt PS, Petrov DA (2014) Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila. PLoS Genetics 10(11): e1004775. http://dx.doi.org/10.1371/journal.pgen.1004775

Additionally, please cite the Dryad data package:

Bergland AO, Behrman EL, O'Brien KR, Schmidt PS, Petrov DA (2014) Data from: Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.v883p
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: