Data from: Reproductive isolation and environmental adaptation shape the phylogeography of mountain pine beetle (Dendroctonus ponderosae)

Dowle E, Bracewell R, Pfrender M, Mock K, Bentz B, Ragland G

Date Published: August 28, 2017

DOI: https://doi.org/10.5061/dryad.vf8sm

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Title S2CollectionInformation
Downloaded 2 times
Description Information regarding collection sites etc. Old codes are used in indexing files this file contains the link between the old and the new codes in the manuscript.
Download S2CollectionInformation.xlsx (62.86 Kb)
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Title Index for Plates 1-7 MPB
Downloaded 3 times
Description Index's for demulitplexing plates. File name indicates plate name. Raw sequencing data is available from NCBI: bioproject PRJNA398557
Download IndexPlateMPB.zip (5.04 Kb)
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Title Raw SNP calls for all samples
Downloaded 5 times
Description Raw SNP calls for all samples. Calls made via GATK. File in vcf format
Download mergedGATKsnpsPineNofilter.vcf.gz (874.7 Mb)
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Title Scaffold Chromosome Information
Downloaded 3 times
Description File with scaffold information for autosomal, x chromosome and y chromosome. Scaffolds relate to the names on the MPB genome
Download ScaffoldChromosomeInformation.zip (6.367 Kb)
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When using this data, please cite the original publication:

Dowle EJ, Bracewell RR, Pfrender ME, Mock KE, Bentz BJ, Ragland GJ (2017) Reproductive isolation and environmental adaptation shape the phylogeography of mountain pine beetle (Dendroctonus ponderosae ). Molecular Ecology 26(21): 6071-6084. https://doi.org/10.1111/mec.14342

Additionally, please cite the Dryad data package:

Dowle E, Bracewell R, Pfrender M, Mock K, Bentz B, Ragland G (2017) Data from: Reproductive isolation and environmental adaptation shape the phylogeography of mountain pine beetle (Dendroctonus ponderosae). Dryad Digital Repository. https://doi.org/10.5061/dryad.vf8sm
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