Data from: High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography

 

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Title Lemmon_Lemmon_Supplemental_Tables_16Nov2011
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Title MtDNALoci
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Title FinalNuclearLoci_ECM7144
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Title FinalNuclearLoci_ECM7210
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Title FinalNuclearLoci_ECM7278
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Title FinalNuclearLoci_ECM7144_ECM7210
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Title FinalNuclearLoci_ECM7144_ECM7278
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Title FinalNuclearLoci_ECM7210_ECM7278
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Title FinalNuclearLoci_ECM7144_ECM7210_ECM7278
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Title ReadMe
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Title VerifiedNuclearLoci
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Title RRL_AnalysisScripts
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Description Python scripts used to produce alleles from raw Illumina data.
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Title InSilicoPrediction
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Description Programs used to predict the number loci given a particular restriction site. The first program (GetCutterFragLens.java) is first used to generate an expected fragment length distribution (from an uninterleaved fasta file). The second program PredictNLoci.r is used to determine the number of loci contained within a specified size range.
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Title All_Primers_And_PCR_Results_LocusBySpecies
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Description This file contains the primer sequences for all loci tested, as well as the results we obtained for each locus x species combination tested.
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Title SupplementalFigures
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When using this data, please cite the original publication:

Lemmon AR, Lemmon EM (2012) High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography. Systematic Biology 61(5): 745-761. http://dx.doi.org/10.1093/sysbio/sys051

Additionally, please cite the Dryad data package:

Lemmon AR, Lemmon EM (2012) Data from: High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.vh151q1c
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