Data from: History, geography, and host use shape genome-wide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei)

Bagley RK, Sousa VC, Niemiller ML, Linnen CR

Date Published: December 29, 2016

DOI: http://dx.doi.org/10.5061/dryad.vh75r

 

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Title Data for Mantel and partial Mantel tests
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Description Folder containing files necessary for replicating Mantel and partial Mantel tests.
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Title Data for demographic analyses using fastsimcoal2
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Description All datasets, template files, parameter files, and custom scripts needed to perform demographic analyses in fastsimcoal2, including: model choice, parameter estimation, bootstrapping, 2-population parameter estimation, and sensitivity analyses. Additional information on the input files and command lines required for each type of demographic analysis, and additional information on running custom scripts, can be found in ReadMe files within each folder.
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Title Population structure analysis using ADMIXTURE
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Description PED and MAP files for population structure analysis in ADMIXTURE.
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Title Population structure analysis using DAPC
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Description RAW file for analysis of population structure using DAPC.
Download 90_80_ropr_dapc.raw (928.3 Kb)
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Title Raw VCF files.
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Description Raw VCF files exported from STACKS.
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When using this data, please cite the original publication:

Bagley RK, Sousa VC, Niemiller ML, Linnen CR (2016) History, geography, and host use shape genome-wide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei). Molecular Ecology 26(4): 1022–1044. http://dx.doi.org/10.1111/mec.13972

Additionally, please cite the Dryad data package:

Bagley RK, Sousa VC, Niemiller ML, Linnen CR (2016) Data from: History, geography, and host use shape genome-wide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.vh75r
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