Data from: Population genomic analysis of Brook Trout Salvelinus fontinalis in Pennsylvania’s Appalachian region

Buonaccorsi VP, Malloy J, Peterson M, Brubaker K, Grant CJ

Date Published: April 14, 2017

DOI: http://dx.doi.org/10.5061/dryad.vk405

 

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Title Stacks and Genepop files
Downloaded 7 times
Description Stacks v 1.36 catalog files and alleles.tsv, matches.tsv, snps.tsv, and tags.tsv files for each individual mapped to Atlantic salmon reference genome. Also included are sumstats.tsv file "batch_1.sumstats.tsv" for individuals grouped into either Susquehanna or Allegheny river basins, and the final filtered GENEPOP file, "batch_1_genepop_HWE001_poolBias.txt" used for analysis after filtering for Hardy Weinberg deviations and for loci that were associated with library pool.
Download Sfontinalis.tar.gz (1.731 Gb)
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Title SupplementFile2
Downloaded 10 times
Description R script "tryRollWindows.R" – for performing genome-anchored smoothed FST and diversity significance analysis. Also included is the data file "Fig3_data_forMark.csv" referenced in the script.
Download SupplementFile2.zip (121.7 Kb)
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When using this data, please cite the original publication:

Buonaccorsi VP, Malloy J, Peterson M, Brubaker K, Grant CJ (2017) Population genomic analysis of Brook Trout Salvelinus fontinalis in Pennsylvania’s Appalachian region. Transactions of the American Fisheries Society 146(3): 485-494. http://dx.doi.org/10.1080/00028487.2017.1285351

Additionally, please cite the Dryad data package:

Buonaccorsi VP, Malloy J, Peterson M, Brubaker K, Grant CJ (2017) Data from: Population genomic analysis of Brook Trout Salvelinus fontinalis in Pennsylvania’s Appalachian region. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.vk405
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