Data from: Modeling and quantifying frequency-dependent fitness in microbial populations with cross-feeding interactions

Ribeck N, Lenski RE

Date Published: March 12, 2015

DOI: http://dx.doi.org/10.5061/dryad.vm752

 

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Title nuoM competition data
Downloaded 17 times
Description Colony count data from 6-day competitions between admixtures of nuoM+ and nuoM- clones.
Download nuoM_competition_data.csv (687 bytes)
Download README.rtf (706 bytes)
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Title S and L competition data
Downloaded 8 times
Description Colony count data from 6-day and 12-day competitions between S and L clones.
Download S_L_competition_data.csv (1.296 Kb)
Download README.rtf (997 bytes)
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Title Fit competition data to linear frequency dependence
Downloaded 3 times
Description Mathematica notebook that fits competition data to a linear paramaterization of frequency-dependent fitness.
Download Fit competition data to FD_linear.nb (52.12 Kb)
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Title Fit competition data to quadratic frequency dependence
Downloaded 6 times
Description Mathematica notebook that fits competition data to a quadratic paramaterization of frequency-dependent fitness.
Download Fit competition data to FD_quadratic.nb (54.98 Kb)
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Title Cross-feeding Monod model and fit to linear frequency dependence
Downloaded 10 times
Description Monod model of a cross-feeding interaction, including dynamics of daily resource use and growth. Fits post-growth cycle relative frequencies to a linear parameterization of frequency dependent fitness.
Download Monod model and fit to linear FD_crossfeeding.nb (144.8 Kb)
Download README.rtf (967 bytes)
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Title Black Queen Monod model and fit to linear frequency dependence
Downloaded 7 times
Description Monod model of a black queen interaction, including dynamics of daily resource use, toxin reduction, and growth. Fits post-growth cycle relative frequencies to a linear parameterization of frequency dependent fitness.
Download Monod model and fit to linear FD_black queen.nb (119.9 Kb)
Download README.rtf (1.024 Kb)
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When using this data, please cite the original publication:

Ribeck N, Lenski RE (2015) Modeling and quantifying frequency-dependent fitness in microbial populations with cross-feeding interactions. Evolution 69(5): 1313–1320. http://dx.doi.org/10.1111/evo.12645

Additionally, please cite the Dryad data package:

Ribeck N, Lenski RE (2015) Data from: Modeling and quantifying frequency-dependent fitness in microbial populations with cross-feeding interactions. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.vm752
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