Data from: Estimating the parameters of background selection and selective sweeps in Drosophila in the presence of gene conversion

Campos JL, Zhao L, Charlesworth B

Date Published: May 30, 2017

DOI: http://dx.doi.org/10.5061/dryad.vs264

 

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Title BGS-models
Downloaded 1 time
Description Programs to run the BGS models. Executables in Fortran (Summation-BGS-model-prog.rtf, Integral-BGS-model-prog.rtf and Data-analysis-1lineage-prog.rtf), specimen input files (Integral-BGS-model-datafile.rtf and Summation-BGS-model-datafile.rtf) and specimen output files (Summation-BGS-model-OP1.rtf and Integral-BGS-model-OP1.rtf).
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Title Data-analyses
Downloaded 1 time
Description These are the programs and specimen results for analysing the original data. Executables in Fortran: Data-analysis-1lineage-prog.rtf and Data-analysis-2species-prog.rtf. Specimen input files: Data-analysis-2species-datafile.rtf and Data-analysis-1lineage-datafile.rtf. Specimen output files: Data-analysis-2species-OP1.rtf and Data-analysis-1lineage-OP1.rtf.
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Title Sweep-effects
Downloaded 1 time
Description Programs to calculate selective sweep effect for nonsynonymous sites (sweeps-NS sites-prog.rtf) and UTRs (sweeps-UTRsites-prog.rtf) gene using the summation method. Specimen input files: sweeps-NSsites-datafile.rtf and sweeps-UTRsites-datafile.rtf. Specimen output files: sweeps-NSsites-OP1.rtf and sweeps-UTRsites-OP1.rtf.
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Title Data for correlation analyses-1lineage
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Download Data for correlation analyses-1lineage.xls (34.81 Kb)
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Title Data for correlation analyses-2species
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Download Data for correlation analyses-2species.xls (35.32 Kb)
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Title Bootstrap-analysis
Downloaded 1 time
Description Bootstrap analysis files. Executables in fortran: Bootstrap-analysis-1lineage-prog.rtf and Bootstrap-analysis-2species-prog.rtf. Specimen input files: Bootstrap-analysis-2species-datafile.rtf and Bootstrap-analysis-1lineage-datafile.rtf. Specimen output files: Bootstrap-analysis-2species-OP1.rtf and Bootstrap-analysis-1lineage-OP1.rtf.
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Title Table_S2A
Downloaded 2 times
Description Population genomic statistics for NS sites for each bin of KA values for mel-yak.
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Title Table_S2B
Downloaded 3 times
Description Population genomic statistics for NS sites for each bin of KA values for mel.
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Title Table_S3A
Downloaded 1 time
Description UTR population genomic statistics for each bin of KA values for mel-yak.
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Title Table_S3B
Downloaded 1 time
Description UTR Population genomic statistics for each bin of KA values for mel.
Download Table_S3B.txt (3.858 Kb)
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When using this data, please cite the original publication:

Campos JL, Zhao L, Charlesworth B (2017) Estimating the parameters of background selection and selective sweeps in Drosophilain the presence of gene conversion. Proceedings of the National Academy of Sciences of the United States of America 114(24): E4762-E4771. http://dx.doi.org/10.1073/pnas.1619434114

Additionally, please cite the Dryad data package:

Campos JL, Zhao L, Charlesworth B (2017) Data from: Estimating the parameters of background selection and selective sweeps in Drosophila in the presence of gene conversion. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.vs264
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