{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.4j0zpc8mm"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.4j0zpc8mm/versions"},"stash:version":{"href":"/api/v2/versions/402472"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.4j0zpc8mm/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.4j0zpc8mm","id":134349,"storageSize":8983041,"relatedPublicationISSN":"2168-6173","title":"Data from: Biomarker detection and validation for corneal involvement in patients with acute infectious conjunctivitis: A multi-country study","authors":[{"firstName":"Gerami","lastName":"Seitzman","email":"","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":0},{"firstName":"Prajna","lastName":"Lalitha","email":"","affiliation":"Aravind Eye Hospital","affiliationROR":"https://ror.org/05vg07g77","affiliations":[{"name":"Aravind Eye Hospital","ror_id":"https://ror.org/05vg07g77"}],"order":1},{"firstName":"N. Venkatesh","lastName":"Prajna","email":"","affiliation":"Aravind Eye Hospital","affiliationROR":"https://ror.org/05vg07g77","affiliations":[{"name":"Aravind Eye Hospital","ror_id":"https://ror.org/05vg07g77"}],"order":2},{"firstName":"Wiwan","lastName":"Sansanayudh","email":"","affiliation":"Phramongkutklao Hospital","affiliationROR":"https://ror.org/007h1qz76","affiliations":[{"name":"Phramongkutklao Hospital","ror_id":"https://ror.org/007h1qz76"}],"order":3},{"firstName":"Vannarut","lastName":"Satitpitakul","email":"","affiliation":"Chulalongkorn University","affiliationROR":"https://ror.org/028wp3y58","affiliations":[{"name":"Chulalongkorn University","ror_id":"https://ror.org/028wp3y58"}],"order":4},{"firstName":"Wipada","lastName":"Laovirojjanakul","email":"","affiliation":"Khon Kaen University","affiliationROR":"https://ror.org/03cq4gr50","affiliations":[{"name":"Khon Kaen University","ror_id":"https://ror.org/03cq4gr50"}],"order":5},{"firstName":"Cindi","lastName":"Chen","email":"","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":6},{"firstName":"Lina","lastName":"Zhong","email":"","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":7},{"firstName":"Kevin","lastName":"Ruder","email":"","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":8},{"firstName":"Travis","lastName":"Redd","email":"","affiliation":"Oregon Health \u0026 Science University","affiliationROR":"https://ror.org/009avj582","affiliations":[{"name":"Oregon Health \u0026 Science University","ror_id":"https://ror.org/009avj582"}],"order":9},{"firstName":"Michael","lastName":"Deiner","email":"","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":10},{"firstName":"Travis","lastName":"Porco","email":"","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":11},{"firstName":"Stephen","lastName":"McLeod","email":"","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":12},{"firstName":"Thomas","lastName":"Lietman","email":"","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":13},{"firstName":"Armin","lastName":"Hinterwirth","email":"armin.hinterwirth@ucsf.edu","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"orcid":"0000-0001-6450-488X","order":14},{"firstName":"Thuy","lastName":"Doan","email":"thuy.doan@ucsf.edu","affiliation":"University of California, San Francisco","affiliationROR":"https://ror.org/043mz5j54","affiliations":[{"name":"University of California, San Francisco","ror_id":"https://ror.org/043mz5j54"}],"order":15}],"abstract":"\u003cp\u003eThis dataset accompanies the study “Biomarker Detection and Validation for Corneal Involvement in Patients With Acute Infectious Conjunctivitis,” published in \u003cem\u003eJAMA Ophthalmology\u003c/em\u003e (doi:10.1001/jamaophthalmol.2024.2891). The study utilized transcriptomic data and machine learning approaches to identify biomarkers associated with corneal involvement in conjunctivitis patients, with apolipoprotein E (APOE) emerging as a key biomarker. The dataset includes raw transcriptomic counts, sample metadata, and gene mapping files, enabling replication and further exploration of the findings.\u003c/p\u003e\n\u003cp\u003eEthical considerations have been addressed, with all patient data anonymized and deidentified to protect privacy.\u003c/p\u003e\n","funders":[{"organization":"National Eye Institute","identifierType":"ror","identifier":"https://ror.org/03wkg3b53","awardNumber":"EY032041","awardDescription":"R01","awardTitle":"","order":0},{"organization":"National Eye Institute","identifierType":"ror","identifier":"https://ror.org/03wkg3b53","awardNumber":"EY031372","awardDescription":"K12","awardTitle":"","order":1},{"organization":"National Eye Institute","identifierType":"ror","identifier":"https://ror.org/03wkg3b53","awardNumber":"EY002162","awardDescription":"","order":2},{"organization":"Research to Prevent Blindness","identifierType":"ror","identifier":"https://ror.org/04drjs621","awardNumber":"","awardDescription":"","order":3}],"keywords":["Conjunctivitis","Transcriptome analysis","Biomarkers"],"fieldOfScience":"Basic medicine","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1001/jamaophthalmol.2024.2891"}],"versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2025-10-18","lastModificationDate":"2025-10-18","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.4j0zpc8mm","changedFields":["title","abstract","funders",[{"index":0,"award":"EY032041","desc":"R01","title":""},{"index":1,"award":"EY031372","desc":"K12","title":""}],"related_identifiers",[{"index":0,"type":"primary_article"}],"data_files"],"license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":49,"downloads":13,"citations":1}}