{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.prr4xgxw8"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.prr4xgxw8/versions"},"stash:version":{"href":"/api/v2/versions/363617"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.prr4xgxw8/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.prr4xgxw8","id":139968,"storageSize":27863357661,"relatedPublicationISSN":"0952-4622","title":"F0 estimation for bioacoustics: A benchmark/training dataset of non-human vocalisations with annotated frequency contours","authors":[{"firstName":"Paul","lastName":"Best","email":"paulobest25@gmail.com","affiliation":"Université de Toulon","affiliationROR":"https://ror.org/02m9kbe37","affiliations":[{"organization":"Université de Toulon","identifier":"https://ror.org/02m9kbe37"}],"orcid":"0000-0003-4996-0726"},{"firstName":"Marcelo","lastName":"Araya-Salas","email":"","affiliation":"Universidad de Costa Rica","affiliationROR":"https://ror.org/02yzgww51","affiliations":[{"organization":"Universidad de Costa Rica","identifier":"https://ror.org/02yzgww51"}],"order":1},{"firstName":"Axel G.","lastName":"Ekström","email":"","affiliation":"University of Neuchâtel","affiliationROR":"https://ror.org/00vasag41","affiliations":[{"organization":"KTH Royal Institute of Technology","identifier":"https://ror.org/026vcq606"},{"organization":"University of Neuchâtel","identifier":"https://ror.org/00vasag41"}],"order":2},{"firstName":"Bárbara","lastName":"Freitas","email":"","affiliation":"Universidad Autónoma de Madrid","affiliationROR":"https://ror.org/01cby8j38","affiliations":[{"organization":"Universidad Autónoma de Madrid","identifier":"https://ror.org/01cby8j38"}],"order":3},{"firstName":"Frants H.","lastName":"Jensen","email":"","affiliation":"Aarhus University","affiliationROR":"https://ror.org/01aj84f44","affiliations":[{"organization":"Aarhus University","identifier":"https://ror.org/01aj84f44"}],"order":4},{"firstName":"Arik","lastName":"Kershenbaum","email":"","affiliation":"University of Cambridge","affiliationROR":"https://ror.org/013meh722","affiliations":[{"organization":"University of Cambridge","identifier":"https://ror.org/013meh722"}],"order":5},{"firstName":"Adriano R.","lastName":"Lameira","email":"","affiliation":"University of Warwick","affiliationROR":"https://ror.org/01a77tt86","affiliations":[{"organization":"University of Warwick","identifier":"https://ror.org/01a77tt86"}],"order":6},{"firstName":"Kenna D. S.","lastName":"Lehmann","email":"","affiliation":"Michigan State University","affiliationROR":"https://ror.org/05hs6h993","affiliations":[{"organization":"Michigan State University","identifier":"https://ror.org/05hs6h993"}],"order":7},{"firstName":"Pavel","lastName":"Linhart","email":"","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"}],"order":8},{"firstName":"Robert C.","lastName":"Liu","email":"","affiliation":"Emory University","affiliationROR":"https://ror.org/03czfpz43","affiliations":[{"organization":"Emory University","identifier":"https://ror.org/03czfpz43"}],"order":9},{"firstName":"Malavika","lastName":"Madhavan","email":"","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"}],"order":10},{"firstName":"Andrew","lastName":"Markham","email":"","affiliation":"University of Oxford","affiliationROR":"https://ror.org/052gg0110","affiliations":[{"organization":"University of Oxford","identifier":"https://ror.org/052gg0110"}],"order":11},{"firstName":"Marie A.","lastName":"Roch","email":"","affiliation":"San Diego State University","affiliationROR":"https://ror.org/0264fdx42","affiliations":[{"organization":"San Diego State University","identifier":"https://ror.org/0264fdx42"}],"order":12},{"firstName":"Holly","lastName":"Root-Gutteridge","email":"","affiliation":"Lincoln University","affiliationROR":"https://ror.org/04ps1r162","affiliations":[{"organization":"Lincoln University","identifier":"https://ror.org/04ps1r162"}],"order":13},{"firstName":"Martin","lastName":"Šálek","email":"","affiliation":"Czech University of Life Sciences Prague","affiliationROR":"https://ror.org/0415vcw02","affiliations":[{"organization":"Czech University of Life Sciences Prague","identifier":"https://ror.org/0415vcw02"}],"order":14},{"firstName":"Grace","lastName":"Smith-Vidaurre","email":"","affiliation":"Michigan State University","affiliationROR":"https://ror.org/05hs6h993","affiliations":[{"organization":"Michigan State University","identifier":"https://ror.org/05hs6h993"}],"order":15},{"firstName":"Ariana","lastName":"Strandburg-Peshkin","email":"","affiliation":"University of Konstanz","affiliationROR":"https://ror.org/0546hnb39","affiliations":[{"organization":"University of Konstanz","identifier":"https://ror.org/0546hnb39"}],"order":16},{"firstName":"Megan R.","lastName":"Warren","email":"","affiliation":"Emory University","affiliationROR":"https://ror.org/03czfpz43","affiliations":[{"organization":"Emory University","identifier":"https://ror.org/03czfpz43"}],"order":17},{"firstName":"Matthew","lastName":"Wijers","email":"","affiliation":"University of Oxford","affiliationROR":"https://ror.org/052gg0110","affiliations":[{"organization":"University of Oxford","identifier":"https://ror.org/052gg0110"}],"order":18},{"firstName":"Ricard","lastName":"Marxer","email":"ricard.marxer@lis-lab.fr","affiliation":"Université de Toulon","affiliationROR":"https://ror.org/02m9kbe37","affiliations":[{"organization":"Université de Toulon","identifier":"https://ror.org/02m9kbe37"}],"orcid":"0000-0001-5099-5059","order":19}],"abstract":"\u003cp\u003eThe fundamental frequency (F0) is a key parameter for characterising structures in vertebrate vocalisations, for instance defining vocal repertoires and their variations at different biological scales (e.g., population dialects, individual signatures). However, the task is too laborious to perform manually, and its automation is complex. Despite significant advancements in the fields of speech and music for automatic F0 estimation, similar progress in bioacoustics has been limited.\u003c/p\u003e\n\u003cp\u003eTo address this gap, we compile and publish a benchmark dataset of over 250,000 calls from 13 taxa, each paired with ground truth F0 values (each call are associated a series of time x frequency points delimitating its frequency contour). These vocalisations range from high to low SNR, from infra-sounds to ultra-sounds, from high to low harmonicity, and some include non-linear phenomena.\u003c/p\u003e\n\u003cp\u003eThis dataset allows to train supervised and/or self-supervised models in estimating F0 values (similarly to CREPE or PESTO for instance). Also, the provided ground truth allows to evaluate the performance and compare different algorithms on these signals (see the associated manuscript for a first benchmark and baseline). Pretrained models and scripts to train or evaluate models on this dataset are available on a separate github repository.\u003c/p\u003e","funders":[{"organization":"Fundação para a Ciência e Tecnologia","identifierType":"ror","identifier":"https://ror.org/00snfqn58","awardNumber":"2020.04569.BD","awardDescription":"","order":0},{"organization":"Swedish Research Council","identifierType":"ror","identifier":"https://ror.org/03zttf063","awardNumber":"2017–00626","awardDescription":"","order":1},{"organization":"UK Research and Innovation","identifierType":"ror","identifier":"https://ror.org/001aqnf71","awardNumber":"MR/T04229X/1","awardDescription":"","order":2},{"organization":"Czech Academy of Sciences, Institute of Vertebrate Biology","identifierType":"ror","identifier":"https://ror.org/05bcgdd94","awardNumber":"RVO 68081766","awardDescription":"","order":3},{"organization":"National Institute on Deafness and Other Communication Disorders","identifierType":"ror","identifier":"https://ror.org/04mhx6838","awardNumber":"DC008343","awardDescription":"R01","order":4},{"organization":"National Institute of Mental Health","identifierType":"ror","identifier":"https://ror.org/04xeg9z08","awardNumber":"MH100023","awardDescription":"P50","order":5},{"organization":"National Institute of Mental Health","identifierType":"ror","identifier":"https://ror.org/04t0s7x83","awardNumber":"MH115831","awardDescription":"R01","order":6},{"organization":"U.S. National Science Foundation","identifierType":"ror","identifier":"https://ror.org/021nxhr62","awardNumber":"OISE1853934","awardDescription":"","order":7},{"organization":"U.S. National Science Foundation","identifierType":"ror","identifier":"https://ror.org/021nxhr62","awardNumber":"IOS1755089","awardDescription":"","order":8},{"organization":"Carlsberg Foundation","identifierType":"ror","identifier":"https://ror.org/01kpjmx04","awardNumber":"CF 15-0915","awardDescription":"","order":9},{"organization":"International Human Frontier Science Program Organization","identifierType":"ror","identifier":"https://ror.org/02ebx7v45","awardNumber":"RGP0051/2019","awardDescription":"","order":10},{"organization":"Czech Science Foundation","identifierType":"ror","identifier":"https://ror.org/01pv73b02","awardNumber":"21-04023K","awardDescription":"","order":11},{"organization":"Swiss National Science Foundation","identifierType":"ror","identifier":"https://ror.org/00yjd3n13","awardNumber":"PCEFP1_186841","awardDescription":"","order":12}],"keywords":["Bioacoustics","fundamental frequency","non-human vocalisations","cross-species"],"fieldOfScience":"Biological sciences","methods":"\u003cdiv\u003e\n\u003cdiv\u003eRecording and annotation methods for each dataset can be found in the associated paper's supporting information.\u003c/div\u003e\n\u003c/div\u003e","relatedWorks":[{"relationship":"software","identifierType":"URL","identifier":"https://github.com/mim-team/bioacoustic_F0_estimation"},{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1080/09524622.2025.2500380"}],"versionNumber":9,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"metadata_changed","publicationDate":"2025-05-08","lastModificationDate":"2025-05-12","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.prr4xgxw8","changedFields":["authors",[{"index":2,"affiliation":"KTH Royal Institute of Technology","affiliationROR":"https://ror.org/026vcq606"},{"index":19,"email":"ricard.marxer@lis-lab.fr","orcid":"0000-0001-5099-5059"}]],"license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":213,"downloads":54,"citations":1}}