{"_links":{"self":{"href":"/api/v2/search"},"first":{"href":"/api/v2/search"},"last":{"href":"/api/v2/search?page=3646"},"next":{"href":"/api/v2/search?page=2"}},"count":20,"total":72909,"_embedded":{"stash:datasets":[{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vx0k6dk88"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vx0k6dk88/versions"},"stash:version":{"href":"/api/v2/versions/471120"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vx0k6dk88/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.vx0k6dk88","id":194919,"storageSize":282300,"relatedPublicationISSN":"0307-6946","title":"Data from: The diversity and functionality of tree-dwelling arthropods are sustained in mixed-species plantations compared with natural forest regeneration","authors":[{"firstName":"Sabina","lastName":"Noor","email":"sabina.noor@concordia.ca","affiliation":"Concordia University","affiliationROR":"https://ror.org/0420zvk78","affiliations":[{"organization":"Concordia University","identifier":"https://ror.org/0420zvk78"}],"orcid":"0000-0001-7313-2897","roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Writing – original draft","identifier":"https://credit.niso.org/contributor-roles/writing-original-draft"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Allison Pamela","lastName":"Yataco","email":"pamela.yataco.marques@gmail.com","affiliation":"Concordia University","affiliationROR":"https://ror.org/0420zvk78","affiliations":[{"organization":"Concordia University","identifier":"https://ror.org/0420zvk78"}],"order":1,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"}]},{"firstName":"Miguel","lastName":"Montaro Girona","email":"miguel.montoro@uqat.ca","affiliation":"Université du Québec en Abitibi-Témiscamingue","affiliationROR":"https://ror.org/02mqrrm75","affiliations":[{"organization":"Université du Québec en Abitibi-Témiscamingue","identifier":"https://ror.org/02mqrrm75"},{"organization":"Universidad de Huelva","identifier":"https://ror.org/03a1kt624"}],"order":2,"roles":[{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Project administration","identifier":"https://credit.niso.org/contributor-roles/project-administration"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"}]},{"firstName":"Emma","lastName":"Despland","email":"","affiliation":"Concordia University","affiliationROR":"https://ror.org/0420zvk78","affiliations":[{"organization":"Concordia University","identifier":"https://ror.org/0420zvk78"}],"order":3,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Project administration","identifier":"https://credit.niso.org/contributor-roles/project-administration"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]}],"abstract":"\u003cp\u003eThis dataset compares the diversity, community composition, and functional characteristics of tree-dwelling arthropods associated with young white spruce (\u003cem\u003ePicea glauca\u003c/em\u003e (Moench) Voss) in mixed-species plantations and naturally regenerated stands under mature forest canopies in the boreal forest of Québec, Canada. We selected ten sites in each forest type and sampled arthropods from young white spruce during early and late summer from 2021 to 2023, although sampling in 2023 was limited to early summer due to forest fires. Arthropods were collected using beat sheeting and timed surveys and identified to species or the lowest practical taxonomic level. The dataset includes arthropod abundance, functional traits based on trophic role and dispersal ability, and canopy-cover data used to assess taxonomic and functional diversity across the two forest habitats.\u003c/p\u003e\n","funders":[{"organization":"Ministère des Ressources naturelles et des Forêts","identifierType":"ror","identifier":"https://ror.org/05ekmpa79","awardNumber":"ALLRP 560575-20","awardDescription":"","awardTitle":"Alliance grant","order":0}],"keywords":["Arthropods","Boreal forests","Community ecology","Functional groups","mixed-species plantations","natural regeneration","beta diversity"],"fieldOfScience":"Biological sciences","methods":"\u003cp\u003eThis study was conducted at the Lac Duparquet Research and Education Forest (FERLD) in northwestern Québec, Canada (48°30′ N, 79°22′ W). We selected ten sites in mixed-species plantations and ten sites in mature forest stands containing naturally regenerated white spruce (Picea glauca) in the understory. Plantation sites consisted of locally sourced white spruce planted in small mixed-species stands with black spruce (\u003cem\u003ePicea mariana\u003c/em\u003e), jack pine (\u003cem\u003ePinus banksiana\u003c/em\u003e), and tamarack (\u003cem\u003eLarix laricina\u003c/em\u003e), with trembling aspen occurring naturally at the edge of plantation sites. Natural forest sites consisted of 30–100-year-old post-fire stands dominated by mature trembling aspen, with young naturally regenerated white spruce in the understory. Sites were separated by approximately 100–2500 m. At each site, ten young white spruce trees approximately 2–3.5 m tall and separated by at least 5 m were selected for sampling. In 2021, ten trees were sampled at each of the 20 sites, while a subset (5 sites per treatment, with 5 trees per site) of these sites was revisited in 2022 and 2023 because of logistical constraints and wildfires.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eArthropod sampling:\u003c/strong\u003e Tree-dwelling arthropods were sampled during early- and late-summer sampling periods. Two complementary sampling methods were used on each selected white spruce tree: beat sheeting and timed surveys. For beat-sheet sampling, a midsection branch approximately 1.5 m above ground and oriented toward the southeast was sampled at 30 strokes per minute in early summer (ES). Timed surveys were conducted in late summer (LS) and consisted of hand-collecting arthropods from the tree for five minutes by trained field associates. Sampling effort varied among years because fewer sites were revisited in 2022 and forest fires restricted sampling in 2023.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eArthropod identification and functional traits:\u003c/strong\u003e Arthropods were identified to species level when appropriate taxonomic keys and specimen condition permitted. Lepidopteran caterpillars, including the Eastern spruce budworm (\u003cem\u003eChoristoneura fumiferana\u003c/em\u003e Clemens), sawflies, aphids, beetles, and spruce budworm parasitoids were identified to species level where possible. Other invertebrates were identified at broader taxonomic levels. For taxonomic diversity analyses, species- and genus-level identifications were treated as operational taxonomic units (OTUs), with spiders (Araneae) and ants (Formicidae) retained as separate OTUs. Lower-resolution groups such as springtails, mites, and molluscs were excluded from the taxonomic diversity analyses. Arthropod taxa were further classified according to functional traits representing trophic role and dispersal ability.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eCanopy cover:\u003c/strong\u003e Canopy cover was measured using a spherical densiometer and expressed as percentage canopy cover. Measurements were obtained during the 2021 sampling year and were averaged across sampled trees to characterize canopy conditions at the site level. Missing canopy-cover measurements are recorded as n/a in the deposited dataset.\u003c/p\u003e\n","relatedWorks":[{"relationship":"dataset","identifierType":"DOI","identifier":"https://doi.org/10.5061/dryad.bnzs7h4j4"}],"versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"metadata_changed","publicationDate":"2026-10-24","lastModificationDate":"2026-10-24","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.vx0k6dk88","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.m905qfvjj"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.m905qfvjj/versions"},"stash:version":{"href":"/api/v2/versions/471131"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.m905qfvjj/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.m905qfvjj","id":195550,"storageSize":46552,"relatedPublicationISSN":"0021-8901","title":"Data from: DNA metabarcoding reveals population-specific dietary impacts on fledging success in a recovering population of a threatened bird, the Mauritius parakeet","authors":[{"firstName":"Rebecca","lastName":"Louch","email":"rebeccalouch@gmail.com","affiliation":"Zoological Society of London","affiliationROR":"https://ror.org/03px4ez74","affiliations":[{"organization":"University of Kent","identifier":"https://ror.org/00xkeyj56"},{"organization":"Zoological Society of London","identifier":"https://ror.org/03px4ez74"},{"organization":"Chester Zoo","identifier":"https://ror.org/01ysrp540"},{"organization":"NERC Environmental Omics Facility","identifier":"https://ror.org/036g3b009"}],"orcid":"0000-0001-9698-1824","roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Writing – original draft","identifier":"https://credit.niso.org/contributor-roles/writing-original-draft"}]},{"firstName":"Simon","lastName":"Tollington","email":"simon.tollington@durrel.org","affiliation":"University of Kent","affiliationROR":"https://ror.org/00xkeyj56","affiliations":[{"organization":"Durrell Wildlife Conservation Trust","identifier":"https://ror.org/04t35nt16"},{"organization":"University of Kent","identifier":"https://ror.org/00xkeyj56"}],"order":1,"roles":[{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"}]},{"firstName":"Sion","lastName":"Henshaw","email":"shenshaw@mauritian-wildlife.org","affiliation":"Mauritian Wildlife Foundation","affiliationROR":"https://ror.org/02z50b706","affiliations":[{"organization":"Mauritian Wildlife Foundation","identifier":"https://ror.org/02z50b706"}],"order":2,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Vikash","lastName":"Tatayah","email":"vtatayah@mauritian-wildlife.org","affiliation":"Mauritian Wildlife Foundation","affiliationROR":"https://ror.org/02z50b706","affiliations":[{"organization":"Mauritian Wildlife Foundation","identifier":"https://ror.org/02z50b706"}],"orcid":"0000-0003-0759-254X","order":3,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Carl","lastName":"Jones","email":"carlgjones@btinternet.com","affiliation":"Durrell Wildlife Conservation Trust","affiliationROR":"https://ror.org/04t35nt16","affiliations":[{"organization":"Durrell Wildlife Conservation Trust","identifier":"https://ror.org/04t35nt16"},{"organization":"Mauritian Wildlife Foundation","identifier":"https://ror.org/02z50b706"}],"order":4,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"}]},{"firstName":"John","lastName":"Ewen","email":"john.ewen@ioz.ac.uk","affiliation":"Zoological Society of London","affiliationROR":"https://ror.org/03px4ez74","affiliations":[{"organization":"Zoological Society of London","identifier":"https://ror.org/03px4ez74"}],"order":5,"roles":[{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Claire","lastName":"Raisin","email":"raisin.claire@gmail.com","affiliation":"Durrell Wildlife Conservation Trust","affiliationROR":"https://ror.org/04t35nt16","affiliations":[{"organization":"Durrell Wildlife Conservation Trust","identifier":"https://ror.org/04t35nt16"}],"order":6,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"}]},{"firstName":"Deborah","lastName":"Dawson","email":"d.a.dawson@sheffield.ac.uk","affiliation":"NERC Environmental Omics Facility","affiliationROR":"https://ror.org/036g3b009","affiliations":[{"organization":"NERC Environmental Omics Facility","identifier":"https://ror.org/036g3b009"}],"orcid":"0000-0001-6671-184X","order":7,"roles":[{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"}]},{"firstName":"Lucy","lastName":"Knowles","email":"l.s.knowles@sheffield.ac.uk","affiliation":"NERC Environmental Omics Facility","affiliationROR":"https://ror.org/036g3b009","affiliations":[{"organization":"NERC Environmental Omics Facility","identifier":"https://ror.org/036g3b009"}],"order":8,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Kathryn","lastName":"Maher","email":"kathryn.maher@sheffield.ac.uk","affiliation":"NERC Environmental Omics Facility","affiliationROR":"https://ror.org/036g3b009","affiliations":[{"organization":"NERC Environmental Omics Facility","identifier":"https://ror.org/036g3b009"}],"order":9,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Kevin","lastName":"Ruhomaun","email":"kruhomaunster@gmail.com","affiliation":"Mauritius National Parks and Conservation Service","affiliations":[{"organization":"Mauritius National Parks and Conservation Service"}],"order":10,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"}]},{"firstName":"Nicolas","lastName":"Zuel","email":"nzuel@ebonyforest.com","affiliation":"Ebony Forest","affiliations":[{"organization":"Ebony Forest"}],"order":11,"roles":[{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Jim","lastName":"Groombridge","email":"j.groombridge@kent.ac.uk","affiliation":"University of Kent","affiliationROR":"https://ror.org/00xkeyj56","affiliations":[{"organization":"University of Kent","identifier":"https://ror.org/00xkeyj56"}],"orcid":"0000-0002-6941-8187","order":12,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"}]}],"abstract":"\u003cp\u003ePopulations of threatened species frequently persist in suboptimal landscapes comprising degraded, altered, and restored habitats. Such habitat mosaics may influence diet, potentially impacting fitness. We investigated dietary variation in the Mauritius (‘echo’) parakeet (\u003cem\u003eAlexandrinus eques\u003c/em\u003e), a threatened species that exists in two isolated populations exhibiting differing habitat quality. DNA metabarcoding of faecal samples identified plant taxa consumed, while reproductive data allowed assessment of nest-level diet-fitness relationships. We identified 83 plant taxa in 206 faecal samples and discovered significant dietary differentiation between the two populations. Despite historical declines in native vegetation across both ranges, parakeet diets in the North population contained significantly higher native species richness (4.7 vs 1.9 species per sample). Consumption of endemic \u003cem\u003eGaertnera\u003c/em\u003e spp. was positively associated with reproductive success in the South, while supplementary food enhanced reproduction in the North, suggesting population-specific dietary strategies. \u003c/p\u003e\n\u003cp\u003e\u003cem\u003eSynthesis and applications:\u003c/em\u003e Our findings suggest that restoration of native/endemic habitat in modified landscapes can directly improve reproductive success in a threatened endemic bird. Conservation strategies must consider the impact of dietary components on reproductive fitness. Conservation managers in Mauritius should consider prioritising protection of key endemic food plants while maintaining tailored supplementary feeding regimes based on local conditions. This approach has broad applicability for threatened species conservation in modified habitats worldwide.\u003c/p\u003e\n","funders":[{"organization":"Natural Environment Research Council","identifierType":"ror","identifier":"https://ror.org/02b5d8509","awardNumber":"NE/S007334/1","awardDescription":"ARIES DTP","awardTitle":"ARIES Doctoral Training Partnership","order":0},{"organization":"Chester Zoo","identifierType":"ror","identifier":"https://ror.org/01ysrp540","awardNumber":"","awardDescription":"","awardTitle":"","order":1},{"organization":"NERC Environmental Omics Facility","identifierType":"ror","identifier":"https://ror.org/036g3b009","awardNumber":"NEOF1405","awardDescription":"","awardTitle":"","order":2}],"keywords":["Conservation science","Ecology","Mauritius"],"fieldOfScience":"Biological sciences","versionNumber":2,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-24","lastModificationDate":"2026-10-24","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.m905qfvjj","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.866t1g24h"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.866t1g24h/versions"},"stash:version":{"href":"/api/v2/versions/471133"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.866t1g24h/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.866t1g24h","id":172672,"storageSize":41919,"relatedPublicationISSN":"2371-1671","title":"Data from: Showy milkweed (\u003cem\u003eAsclepias speciosa\u003c/em\u003e) distribution and insect community composition at the northern range of the western monarch butterfly (\u003cem\u003eDanaus plexippus\u003c/em\u003e)","authors":[{"firstName":"Julie","lastName":"Sieg","email":"","affiliation":"University of British Columbia","affiliationROR":"https://ror.org/03rmrcq20","affiliations":[{"organization":"University of British Columbia","identifier":"https://ror.org/03rmrcq20"}]},{"firstName":"Cori","lastName":"Dixon","email":"","affiliation":",","affiliations":[{"organization":","}]},{"firstName":"Sue","lastName":"Elwell","email":"","affiliation":",","affiliations":[{"organization":","}]},{"firstName":"Shirley","lastName":"Morrison","email":"","affiliation":",","affiliations":[{"organization":","}]},{"firstName":"Kathryn","lastName":"Poole","email":"","affiliation":",","affiliations":[{"organization":","}]},{"firstName":"Ellen","lastName":"Scott","email":"","affiliation":",","affiliations":[{"organization":","}]},{"firstName":"Dennis","lastName":"St. John","email":"","affiliation":",","affiliations":[{"organization":","}]},{"firstName":"Michelle","lastName":"Tseng","email":"tsengm@mail.ubc.ca","affiliation":"University of British Columbia","affiliationROR":"https://ror.org/03rmrcq20","affiliations":[{"organization":"University of British Columbia","identifier":"https://ror.org/03rmrcq20"}],"orcid":"0000-0002-4306-507X"}],"abstract":"\u003cp\u003eThe monarch butterfly (\u003cem\u003eDanaus plexippus\u003c/em\u003e) is one of the most iconic butterflies worldwide. Alarmingly, the North American population has declined steadily over the last three decades. The western population in particular has fallen substantially from overwintering numbers in the millions to less than 10,000. Most research on monarch butterfly ecology has focused on the eastern population. Much less is known about the western population and in particular, almost no studies have investigated monarch ecology in BC, the northernmost breeding region. We address this knowledge gap by repeating a 2014 BC Government survey of 149 sites of Asclepias speciosa, the only native monarch host plant in this region. For 18 focal milkweed sites, we also quantified the associated insect and spider community. Overall, we document little change in milkweed patch number in smaller sites, but all larger sites now contain fewer milkweed patches. Additionally, we found a statistically significant association between the insect community and the likelihood of adult monarch visitation. However, we observed very few adult monarchs throughout the sampling period, and thus these results should be interpreted with caution. Our study provides much-needed ecological information on the northern breeding areas of the western monarch.\u003c/p\u003e\n","funders":[{"organization":"Natural Sciences and Engineering Research Council of Canada","identifierType":"ror","identifier":"https://ror.org/01h531d29","awardNumber":"","awardDescription":"","awardTitle":"","order":0}],"keywords":["monarch butterfly","milkweed","Danaus plexippus","Asclepias speciosa","British Columbia","Community ecology"],"fieldOfScience":"Biological sciences","versionNumber":2,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-24","lastModificationDate":"2026-10-24","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.866t1g24h","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.2280gb681"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.2280gb681/versions"},"stash:version":{"href":"/api/v2/versions/470900"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.2280gb681/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.2280gb681","id":192761,"storageSize":4658202,"title":"POD|LCA project data: Product stages (A1-A3)","authors":[{"firstName":"Ethan","lastName":"Ellingboe","email":"etel5501@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"orcid":"0009-0007-5856-0886"},{"firstName":"Monica","lastName":"Huang","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"orcid":"0000-0002-8247-006X","order":1},{"firstName":"Isuru","lastName":"Nanayakkara","email":"kiun@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"order":2},{"firstName":"Kathrina","lastName":"Simonen","email":"ksimonen@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"orcid":"0000-0002-4028-6475","order":3},{"lastName":"","email":"","order":4}],"abstract":"\u003cp\u003e\u003cem\u003eProject context:\u003c/em\u003e This dataset was created as part of the POD|LCA project by the Life Cycle Lab at the University of Washington, and contains data enabling evaluation of environmental impacts and emissions for product and process inputs for life cycle assessment (LCA) stages A1-A3, including data for raw and intermediate materials, transport, and manufacturing. For more information on the POD|LCA project, please visit the POD|LCA project links in the methods section below. \u003c/p\u003e\n\u003cp\u003e\u003cem\u003eSummary of method of creating the data:\u003cstrong\u003e \u003c/strong\u003e\u003c/em\u003eThis dataset contains several individual files relevant to evaluation of environmental impacts and emissions for product LCA stages A1-A3 and beyond. All included environmental impacts and emissions data are evaluated from the corresponding life cycle inventory (LCI) process data from open-source LCA databases in the Federal LCA Commons (FLCAC), evaluated in OpenLCA (version 2.6.1) using the LCIA method \"Characterization Factors for Construction Material EPD Indicators (ISO21930-LCIA-US)\" available on the Federal LCA Commons website, with added greenhouse gas inventories as described below. A supporting file containing data and assumptions relevant to evaluation of biogenic carbon content of materials is included.\u003c/p\u003e\n\u003cp\u003e\u003cem\u003eSummary of the data itself: \u003c/em\u003eEach database entry (row) in the impacts and emissions data file contains fields indicating the process categorization, name, UUID, geographic location, and description from the source database, as well as the declared unit and quantity of the product or quantitative reference flow. If the declared unit is not a unit of mass, a density value is provided when applicable.\u003c/p\u003e\n\u003cp\u003eEnvironmental impact categories evaluated for each process are global warming potential (GWP), acidification potential (AP), eutrophication potential (EP), ozone depletion potential (ODP), and photochemical oxidant creation potential (POCP). Greenhouse gas emissions inventories included are carbon dioxide (CO\u003csub\u003e2\u003c/sub\u003e), methane (CH\u003csub\u003e4\u003c/sub\u003e), and nitrous oxide (N\u003csub\u003e2\u003c/sub\u003eO). The additional life cycle inventory indicator \"nonrenewable energy, fossil\" (NREF) is also evaluated for each process. These impact and emissions values are evaluated from the default product system generated from the corresponding process in OpenLCA with unit processes preferred. LCI database product system linking was validated and individual product systems were checked when possible, however not every product system has been reviewed. \u003c/p\u003e\n\u003cp\u003eIn addition to the overall environmental impact results, the quantity of electricity required as a direct input to the process (calculated as the sum of all electricity inputs to the process) is included along with the contribution to each impact category and emission inventory from the direct electricity inputs. The direct electricity quantity required, and impacts contributed from electricity, are calculated using the \"upstream tree\" feature of the olca-ipc OpenLCA python module. \u003c/p\u003e\n\u003cp\u003eIf the product of a process is a chemical entity with an available International Chemical Identified (InChI) Key, the chemical entity name, InChIKey, and ChemOnt classification are included. Chemical entity ChemOnt classifications are evaluated using ClassyFire. \u003c/p\u003e\n\u003cp\u003eIf the product of a process contains biogenic carbon, relevant data and assumptions for evaluating the quantity of stored biogenic carbon are included. In particular, this includes the mass percent of water (moisture content) and biogenic carbon used to evaluate the stored biogenic carbon quantity in the material. The growth model type (temporal emission profile) and rotation period (growth period) are included for use in dynamic LCA calculations. Biomaterial properties are assigned from the corresponding biomaterial property data entry in the supporting biomaterial properties data file. \u003c/p\u003e\n\u003cp\u003eIf the product of the process has the potential to undergo mineral carbonation (e.g., concrete) during manufacturing (i.e., accelerated carbonation), use, or end-of-life, this is indicated in the mineral carbonation potential field. The mineral carbon quantity of zero is included as a placeholder which can be modified in the POD|LCA materials tool if accelerated mineral carbonation is applicable in a custom scenario. \u003c/p\u003e\n\u003cp\u003e\u003cem\u003eApplication/use of the data: \u003c/em\u003eThis data is primarily created for use with POD|LCA tools for conducting cradle-to-gate LCAs of building materials. The data enables evaluation of product LCA stage (A1-A3) impacts, primarily for building materials. Data hosted on Dryad may also be used outside of POD|LCA tools in compliance with the CC0 license.\u003c/p\u003e\n\u003cp\u003e\u003cem\u003eAcknowledgements: \u003c/em\u003eThis material is based on work developed as part of the Parametric Open Data for Life Cycle Assessment (POD|LCA) project supported by the Advanced Research Projects Agency-Energy (ARPA-E) in the U.S. Department of Energy, under award number DE-AR0001624 as part of the program under program number DE-FOA-0001953 (Topic V: Life Cycle Assessment for Carbon Negative Buildings). The views and opinions of the authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Team members who also contributed to this work include Yang Shen and Stephanie Carlisle.\u003c/p\u003e\n","funders":[{"organization":"Advanced Research Projects Agency - Energy","identifierType":"ror","identifier":"https://ror.org/03q1rgc19","awardNumber":"DE-AR0001624","awardDescription":"","awardTitle":"","order":0}],"keywords":["life cycle assessment","product stage","Materials","energy","emissions","Environmental impacts","Manufacturing processes"],"fieldOfScience":"Engineering and technology","methods":"\u003cp\u003eFor more information on the POD|LCA project, please visit \u003ca href=\"https://podlca.uw.edu/\"\u003ehttps://podlca.uw.edu/\u003c/a\u003e and \u003ca href=\"https://www.lifecyclelab.org/project/pod-lca/\"\u003ehttps://www.lifecyclelab.org/project/pod-lca/\u003c/a\u003e.\u003c/p\u003e\n\u003cul\u003e\n\u003cli\u003ePOD|LCA methods specifically relevant to impact database creation are available at: \u003ca href=\"https://podlca.uw.edu/methods/lca-methods/impact-factors-module\"\u003ehttps://podlca.uw.edu/methods/lca-methods/impact-factors-module.\u003c/a\u003e\n\u003c/li\u003e\n\u003cli\u003eFor more information on biomaterial properties data and biogenic carbon storage in POD|LCA data, please see: \u003ca href=\"https://podlca.uw.edu/methods/lca-methods/carbon-storage-module/biogenic-material-data\"\u003ehttps://podlca.uw.edu/methods/lca-methods/carbon-storage-module/biogenic-material-data\u003c/a\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n","versionNumber":4,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"metadata_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.2280gb681","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.sf7m0cgpg"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.sf7m0cgpg/versions"},"stash:version":{"href":"/api/v2/versions/470871"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.sf7m0cgpg/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.sf7m0cgpg","id":189617,"storageSize":475217,"title":"POD|LCA project data: End-of-life deconstruction/demolition, transport distance, waste processing, and disposal","authors":[{"firstName":"Ethan","lastName":"Ellingboe","email":"etel5501@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"orcid":"0009-0007-5856-0886","order":0},{"firstName":"Christina","lastName":"Gallucci","email":"bjarvin@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"order":1},{"firstName":"Monica","lastName":"Huang","email":"myth29@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"order":2},{"firstName":"Isuru","lastName":"Nanayakkara","email":"kiun@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"order":3},{"firstName":"Francesca","lastName":"Pierobon","email":"pierobon@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"},{"organization":"Pacific Northwest National Laboratory","identifier":"https://ror.org/05h992307"}],"order":4},{"firstName":"Kathrina","lastName":"Simonen","email":"ksimonen@uw.edu","affiliation":"University of Washington","affiliationROR":"https://ror.org/00cvxb145","affiliations":[{"organization":"University of Washington","identifier":"https://ror.org/00cvxb145"}],"orcid":"0000-0002-4028-6475","order":5},{"lastName":"","email":"","order":6}],"abstract":"\u003cp\u003e\u003cem\u003eProject context:\u003c/em\u003e This dataset was created as part of the POD|LCA project by the Life Cycle Lab at the University of Washington, and contains data enabling evaluation of environmental impacts and emissions for end-of-life (EOL) life cycle assessment (LCA) stages C1-C4. For more information on the POD|LCA project, please see the project website and methods documentation at the links provided below.\u003c/p\u003e\n\u003cp\u003e\u003cem\u003eSummary of method of creating the data:\u003cstrong\u003e \u003c/strong\u003e\u003c/em\u003eThis dataset contains several individual files relevant to evaluation of environmental impacts and emissions for EOL LCA stages C1-C4. For LCA stage C1 (deconstruction/demolition), environmental impact and emission factors were evaluated for each building material category by applying demolition impact data from the literature to material use intensity (MUI) data from the CLF Benchmark Study. After deconstruction/demolition, the portion of each building material category disposed to each applicable EOL scenario is defined by the \"EOL Waste Distribution\" for each building material category. For LCA stage C2 (transport to waste processing/disposal), transport distances for each applicable EOL scenario and US state were evaluated according to the methods detailed in the POD|LCA documentation\u003cem\u003e\u003cstrong\u003e.\u003c/strong\u003e\u003c/em\u003e For LCA stages C3 (waste processing) and C4 (waste disposal), environmental impacts and emissions are evaluated using applicable waste processing and disposal data (processes) from open-source LCA databases including the Federal LCA Commons (FLCAC) and Life Cycle Inventory database of the Swiss Federal Administration, (BAFU:2026), evaluated in OpenLCA (version 2.6.1) using the LCIA method \"Characterization Factors for Construction Material EPD Indicators (ISO21930-LCIA-US)\" from the Federal LCA Commons, modified to include all applicable elementary flows when used with BAFU data. Process data for recycling of polyethylene and polypropylene are derived from the report \u003cem\u003eLife Cycle Impacts for Postconsumer Recycled Resins: PET, HDPE, and PP\u003c/em\u003e by Franklin Associates, 2018. Supporting data files containing data and assumptions relevant to evaluation of mineral carbonation (mineral carbon storage), biogenic carbon storage and emissions, and waste category mapping are also included. \u003c/p\u003e\n\u003cp\u003e\u003cem\u003eSummary of the data itself: \u003c/em\u003eEnvironmental impact categories included are global warming potential (GWP), acidification potential (AP), eutrophication potential (EP), ozone depletion potential (ODP), and photochemical oxidant creation potential (POCP). Greenhouse gas emissions inventories included are carbon dioxide (CO\u003csub\u003e2\u003c/sub\u003e), methane (CH\u003csub\u003e4\u003c/sub\u003e), and nitrous oxide (N\u003csub\u003e2\u003c/sub\u003eO). These impact categories and emissions inventories are included for all EOL data for LCA stages C1, C3, and C4 for all building material categories and EOL scenarios. The EOL waste distribution defines the default mass portion (%) of each material category disposed to landfill, incineration, recycling, and compost scenarios. \u003c/p\u003e\n\u003cp\u003e\u003cem\u003eApplication/use of the data: \u003c/em\u003eThis data is primarily created for use with POD|LCA tools for conducting cradle-to-grave LCAs of buildings and materials. The data enables evaluation of EOL LCA stage impacts, primarily for building materials. The data hosted on Dryad may also be used outside of POD|LCA tools in compliance with the CC0 license. C3 and C4 environmental impact and emissions data is subject to terms of use in alignment with the terms of use of the source databases. Data derived from the Life Cycle Inventory database of the Swiss Federal Administration (BAFU:2026) is subject to terms of use equivalent to the BAFU terms of use. Since the C3 and C4 data derived from BAFU is not compatible with the CC0 license, C3 and C4 data is hosted on Zenodo with the \u003cem\u003eCreative Commons Attribution NonCommercial ShareAlike 4.0 International\u003c/em\u003e license (CC BY-NC-SA).\u003c/p\u003e\n\u003cp\u003e\u003cem\u003eAcknowledgements: \u003c/em\u003eThis material is based on work developed as part of the Parametric Open Data for Life Cycle Assessment (POD|LCA) project supported by the Advanced Research Projects Agency-Energy (ARPA-E) in the U.S. Department of Energy, under award number DE-AR0001624 as part of the program under program number DE-FOA-0001953 (Topic V: Life Cycle Assessment for Carbon Negative Buildings). The views and opinions of the authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Team members who also contributed to this work include Mahsa Torabi and Milad Ashtiani.\u003c/p\u003e\n","funders":[{"organization":"Advanced Research Projects Agency - Energy","identifierType":"ror","identifier":"https://ror.org/03q1rgc19","awardNumber":"DE-AR0001624","awardDescription":"","awardTitle":"","order":0}],"keywords":["life cycle assessment","end-of-life","Environmental impacts","Greenhouse gas emissions"],"fieldOfScience":"Engineering and technology","methods":"\u003cp\u003eFor more information on the POD|LCA project, please visit \u003ca href=\"https://podlca.uw.edu/\"\u003ehttps://podlca.uw.edu/\u003c/a\u003e and \u003ca href=\"https://www.lifecyclelab.org/project/pod-lca/\"\u003ehttps://www.lifecyclelab.org/project/pod-lca/\u003c/a\u003e.\u003c/p\u003e\n\u003cp\u003eFor more details on methods specific to end-of-life data, please see:\u003c/p\u003e\n\u003cul\u003e\n\u003cli\u003eEnd-of-life module documentation: \u003ca href=\"https://podlca.uw.edu/methods/lca-methods/end-of-life-module\"\u003ehttps://podlca.uw.edu/methods/lca-methods/end-of-life-module\u003c/a\u003e\n\u003cul\u003e\n\u003cli\u003eEnd-of-life module data sources: \u003ca href=\"https://podlca.uw.edu/methods/lca-methods/end-of-life-module/data-sources\"\u003ehttps://podlca.uw.edu/methods/lca-methods/end-of-life-module/data-sources\u003c/a\u003e\n\u003c/li\u003e\n\u003cli\u003eEnd-of-life impact factors (C3/C4) database: \u003ca href=\"https://podlca.uw.edu/methods/lca-methods/impact-factors-module/impact-factors-database/end-of-life-sub-database\"\u003ehttps://podlca.uw.edu/methods/lca-methods/impact-factors-module/impact-factors-database/end-of-life-sub-database\u003c/a\u003e\n\u003c/li\u003e\n\u003cli\u003eEnd-of-life transport distances (C2) : \u003ca href=\"https://podlca.uw.edu/methods/lca-methods/transportation-module/calculation-process/end-of-life-distances\"\u003ehttps://podlca.uw.edu/methods/lca-methods/transportation-module/calculation-process/end-of-life-distances\u003c/a\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp\u003eFor more information on the BAFU life cycle assessment database and terms of use applicable to the BAFU LCI database, please see: \u003ca href=\"https://www.bafu.admin.ch/en/life-cycle-assessment\"\u003ehttps://www.bafu.admin.ch/en/life-cycle-assessment\u003c/a\u003e. Data derived from the Life Cycle Inventory database of the Swiss Federal Administration (BAFU:2026) is subject to terms of use equivalent to the BAFU terms of use. Since C3/C4 impact factors data derived from BAFU is not compatible with the CC0 license, C3/C4 data is hosted on Zenodo with the \u003cem\u003eCreative Commons Attribution NonCommercial ShareAlike 4.0 International\u003c/em\u003e license (CC BY-NC-SA, \u003ca href=\"https://creativecommons.org/licenses/by-nc-sa/4.0/\"\u003ehttps://creativecommons.org/licenses/by-nc-sa/4.0/\u003c/a\u003e).\u003c/p\u003e\n","relatedWorks":[{"relationship":"dataset","identifierType":"DOI","identifier":"https://doi.org/10.5061/dryad.05qfttfhh"},{"relationship":"dataset","identifierType":"DOI","identifier":"https://doi.org/10.5061/dryad.80gb5mm46"},{"relationship":"dataset","identifierType":"DOI","identifier":"https://doi.org/10.5061/dryad.n02v6wxbr"},{"relationship":"software","identifierType":"URL","identifier":"http://podlca.uw.edu"},{"relationship":"software","identifierType":"DOI","identifier":"https://doi.org/10.5281/zenodo.23405831"}],"versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.sf7m0cgpg","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.h44j0zq2n"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.h44j0zq2n/versions"},"stash:version":{"href":"/api/v2/versions/470969"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.h44j0zq2n/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.h44j0zq2n","id":187974,"storageSize":10224231,"relatedPublicationISSN":"0006-3592","title":"Data from: Nuclease-free scalable purification of physalis mottle virus-like particles expressed in \u003cem\u003eEscherichia coli\u003c/em\u003e","authors":[{"firstName":"Sean","lastName":"Hsu","email":"sehsu@ucsd.edu","affiliation":"University of California San Diego","affiliationROR":"https://ror.org/0168r3w48","affiliations":[{"organization":"University of California San Diego","identifier":"https://ror.org/0168r3w48"}],"orcid":"0000-0003-4592-703X","order":0},{"firstName":"Patrick","lastName":"Opdensteinen","email":"popdensteinen@ucsd.edu","affiliation":"University of California San Diego","affiliationROR":"https://ror.org/0168r3w48","affiliations":[{"organization":"University of California San Diego","identifier":"https://ror.org/0168r3w48"}],"orcid":"0000-0002-4068-0843","order":1},{"firstName":"Tariq","lastName":"Hussain","email":"tahussain@ucsd.edu","affiliation":"University of California San Diego","affiliationROR":"https://ror.org/0168r3w48","affiliations":[{"organization":"University of California San Diego","identifier":"https://ror.org/0168r3w48"}],"order":2},{"firstName":"Nicole","lastName":"Steinmetz","email":"nsteinmetz@ucsd.edu","affiliation":"University of California San Diego","affiliationROR":"https://ror.org/0168r3w48","affiliations":[{"organization":"University of California San Diego","identifier":"https://ror.org/0168r3w48"}],"orcid":"0000-0002-0130-0481","order":3}],"abstract":"\u003cp\u003e\u003cbr\u003e\nPlant virus-like particles (VLPs) are promising nanotechnology platforms, but their translation requires purification strategies suitable for large-scale production. Here, we developed a nuclease-free downstream process for physalis mottle virus (PhMV) VLPs expressed in \u003cem\u003eEscherichia coli\u003c/em\u003e, combining ammonium sulfate precipitation, low-pH extraction, ultrafiltration/diafiltration (UF/DF), and flow-through anion-exchange (AEX) chromatography. Ammonium sulfate precipitation separated the VLPs from bulk host nucleic acids, whereas extraction at low pH removed most host cell proteins (HCPs) while retaining the VLPs in solution. Subsequent UF/DF was used to concentrate VLPs and simultaneously achieve buffer exchange for downstream AEX chromatography, which removed remaining HCPs while the PhMV VLPs were collected in the flow-through fraction. This combined workflow produced PhMV VLPs with \u0026gt;95% purity and a recovery of ~68%. Compared with conventional workflows based on ultracentrifugation and size-exclusion chromatography, the new process reduced the purification time from ~3 days to 1 day and hands-on processing time from ~18 h to 8 h, also increasing the average yield from ~80 to ~130 mg PhMV VLPs per liter of culture. The resulting particles were intact and monodisperse, with a lower content of host nucleic acid than VLPs purified by ultracentrifugation. The VLPs also retained the chemical addressability of lysine and cysteine residues. These results establish a scalable, nuclease-free purification strategy for PhMV VLPs expressed in bacteria and provide a framework for the downstream processing of plant VLP platforms produced in microbial systems.\u003c/p\u003e\n","funders":[{"organization":"National Heart, Lung, and Blood Institute","identifierType":"ror","identifier":"https://ror.org/012pb6c26","awardNumber":"5R01HL175766-02","awardURI":"https://reporter.nih.gov/project-details/11243503","awardDescription":"","awardTitle":"Nanotechnology-based cardiovascular vaccines","order":1},{"organization":"NASA Research Park","identifierType":"ror","identifier":"https://ror.org/04hccab49","awardNumber":"NNX16AO69A","awardDescription":"Human Research Program","awardTitle":"","order":2}],"keywords":["Ultrafiltration","Ion exchange chromatography","Recombinant protein purification","Bionanotechnology","Ultracentrifugation"],"fieldOfScience":"Natural sciences","versionNumber":5,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.h44j0zq2n","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wpzgmsc50"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wpzgmsc50/versions"},"stash:version":{"href":"/api/v2/versions/470960"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wpzgmsc50/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.wpzgmsc50","id":188290,"storageSize":718977963,"relatedPublicationISSN":"2692-8205","title":"Data from: Increased CA3 burst activity in \u003cem\u003eDoc2α\u003c/em\u003e and \u003cem\u003eSyt7\u003c/em\u003e knockout mice","authors":[{"firstName":"Raghava Jagadeesh","lastName":"Salaka","email":"salaka@wisc.edu","affiliation":"University of Wisconsin–Madison","affiliationROR":"https://ror.org/01y2jtd41","affiliations":[{"organization":"University of Wisconsin–Madison","identifier":"https://ror.org/01y2jtd41"},{"organization":"Howard Hughes Medical Institute","identifier":"https://ror.org/006w34k90"}],"orcid":"0000-0002-1359-3875"},{"firstName":"Edwin","lastName":"Chapman","email":"chapman@wisc.edu","affiliation":"University of Wisconsin–Madison","affiliationROR":"https://ror.org/01y2jtd41","affiliations":[{"organization":"University of Wisconsin–Madison","identifier":"https://ror.org/01y2jtd41"},{"organization":"Howard Hughes Medical Institute","identifier":"https://ror.org/006w34k90"}],"orcid":"0000-0001-9787-8140","order":1}],"abstract":"\u003cp\u003eThe hippocampal CA3 subfield is central to associative learning and memory consolidation. CA3 pyramidal neurons execute these functions by generating hypersynchronous bursts that feed forward to the CA1. Extensive recurrent collateral connections within CA3 are crucial for the generation of this burst activity. Double C2 domain-containing protein α (Doc2α) and synaptotagmin 7 (Syt7) are high-affinity calcium sensors implicated in asynchronous release (AR) of neurotransmitter and in the exocytosis of dense-core vesicles (DCVs). Additionally, Doc2α is a sensor for miniature neurotransmission, whereas Syt7 is involved in synaptic facilitation and SV replenishment. Both Doc2α and Syt7 are expressed in the hippocampus, but their potential roles in spontaneously bursting networks, like CA3, remain unanswered. Using whole-cell recordings at near-physiological conditions (33-34 °C and 1.2 mM Ca2+) in acute hippocampal slices obtained from juvenile (P15-21) KO mice lacking Doc2α, Syt7, or both proteins, we report no changes in spontaneous inhibitory or excitatory postsynaptic current frequency or amplitude in CA1 pyramidal neurons. However, there was a marked increase in burst activity, originating in CA3, in all three KO conditions; this was not due to changes in AR or the intrinsic properties of CA3 pyramidal neurons. We propose that this novel burst phenotype in Doc2α- and Syt7-KO mice is unrelated to changes in neurotransmitter release but might be mediated by changes in neuropeptide release from DCVs in the CA3 subfield, or along upstream pathways. Regardless of the underlying mechanisms, this work reveals that both Doc2α and Syt7 act to regulate network activity.\u003c/p\u003e\n","funders":[{"organization":"National Institute of Mental Health","identifierType":"ror","identifier":"https://ror.org/04xeg9z08","awardNumber":"5R01MH061876-23","awardURI":"https://reporter.nih.gov/project-details/11300995","awardDescription":"","awardTitle":"Synaptotagmin C2B Domain as a Ca2+ Sensing Module","order":0},{"organization":"National Institute of Neurological Disorders and Stroke","identifierType":"ror","identifier":"https://ror.org/01s5ya894","awardNumber":"5R35NS136306-02","awardURI":"https://reporter.nih.gov/project-details/11238921","awardDescription":"","awardTitle":"Fusion pore structure and dynamics","order":1},{"organization":"Howard Hughes Medical Institute","identifierType":"ror","identifier":"https://ror.org/006w34k90","awardNumber":"","awardDescription":"","awardTitle":"","order":2}],"keywords":["Neuroscience","Hippocampus","Neurotransmitters","Neuropeptides","Synaptic vesicles","Synaptic plasticity"],"fieldOfScience":"Biological sciences","relatedWorks":[{"relationship":"preprint","identifierType":"DOI","identifier":"https://doi.org/10.64898/2026.07.01.735713"}],"versionNumber":6,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.wpzgmsc50","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.t4b8gtjkb"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.t4b8gtjkb/versions"},"stash:version":{"href":"/api/v2/versions/470936"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.t4b8gtjkb/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.t4b8gtjkb","id":195891,"storageSize":10675,"relatedPublicationISSN":"0022-0477","title":"Data and code from: Scaling up from species traits to ecosystem functioning: An empirical test on grassland CO\u003csub\u003e2\u003c/sub\u003e exchanges","authors":[{"firstName":"Tereza","lastName":"Švancárová","email":"vackot02@prf.jcu.cz","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"}],"orcid":"0009-0008-4028-7292"},{"firstName":"Éric","lastName":"Garnier","email":"eric.garnier@cefe.cnrs.fr","affiliation":"Centre d'Écologie Fonctionnelle et Évolutive","affiliationROR":"https://ror.org/008rywf59","affiliations":[{"organization":"Centre d'Écologie Fonctionnelle et Évolutive","identifier":"https://ror.org/008rywf59"}],"order":2},{"firstName":"Tomáš","lastName":"Hájek","email":"tomas.hajek@prf.jcu.cz","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"}],"orcid":"0000-0002-5981-5840","order":3},{"firstName":"Eva","lastName":"Janíková","email":"eva.sva@centrum.cz","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"}],"orcid":"0000-0003-1649-9435","order":4},{"firstName":"Marie","lastName":"Konečná","email":"konecm02@prf.jcu.cz","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"}],"order":5},{"firstName":"Aleš","lastName":"Lisner","email":"aleslisner@seznam.cz","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"}],"orcid":"0000-0003-4881-7362","order":6},{"firstName":"Jan","lastName":"Lepš","email":"suspa@prf.jcu.cz","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"},{"organization":"Czech Academy of Sciences","identifier":"https://ror.org/053avzc18"}],"orcid":"0000-0002-4822-7429","order":7},{"firstName":"Jules","lastName":"Segrestin","email":"jules.segrestin@univ-lyon1.fr","affiliation":"University of South Bohemia in České Budějovice","affiliationROR":"https://ror.org/033n3pw66","affiliations":[{"organization":"University of South Bohemia in České Budějovice","identifier":"https://ror.org/033n3pw66"}],"order":8}],"abstract":"\u003cp\u003ePredicting ecosystem functioning is increasingly important in the face of global change. Aggregating species traits at the community level has been proposed as a promising approach for predicting ecosystem functioning. Yet recent studies report inconsistent results, raising questions about the reliability of traits as predictors. We conducted an empirical field study based on detailed, locally measured data that account for intraspecific variability to test whether species traits can be reliably scaled up to ecosystem carbon fluxes. We measured a comprehensive set of plant functional traits together with short-term ecosystem carbon fluxes across 18 grasslands varying in species composition. This allowed us to assess the relative contributions of two functional dimensions of vegetation to ecosystem carbon fluxes – size-related traits (quantity) and resource-acquisition traits (quality). Our results show that both dimensions independently and equally contribute to ecosystem photosynthesis. While plant height was a reliable proxy of the quantity dimension, only direct measures of leaf photosynthetic capacity could predict the quality dimension. Hence, commonly used resource-acquisition traits such as specific leaf area and leaf nitrogen content were not informative predictors. \u003cem\u003eSynthesis.\u003c/em\u003e Our findings support the growing interest in the trait-based approach for predicting ecosystem carbon fluxes but also caution that some traits remain weak and context-dependent predictors, underscoring the need for careful trait selection and awareness of scaling limitations.\u003c/p\u003e\n","funders":[{"organization":"Czech Science Foundation","identifierType":"ror","identifier":"https://ror.org/01pv73b02","awardNumber":"23-07087S","awardDescription":"","awardTitle":"","order":0}],"keywords":["Grasslands","Trait-based approach","Net photosynthesis","Net ecosystem CO2 exchnage"],"fieldOfScience":"Natural sciences","versionNumber":4,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.t4b8gtjkb","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.7m0cfxpsp"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.7m0cfxpsp/versions"},"stash:version":{"href":"/api/v2/versions/470898"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.7m0cfxpsp/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.7m0cfxpsp","id":60145,"storageSize":166473,"relatedPublicationISSN":"1095-9203","title":"Data from: Diverse aging rates in ectothermic tetrapods provide insights for the evolution of aging and longevity","authors":[{"firstName":"Beth","lastName":"Reinke","email":"e-reinke@neiu.edu","affiliation":"Northeastern Illinois University","affiliationROR":"https://ror.org/04edns687","affiliations":[{"organization":"Northeastern Illinois University","identifier":"https://ror.org/04edns687"}],"orcid":"0000-0002-9620-001X"},{"firstName":"Anne","lastName":"Bronikowski","email":"abroniko@msu.edu","affiliation":"Michigan State University","affiliationROR":"https://ror.org/05hs6h993","affiliations":[{"organization":"Michigan State University","identifier":"https://ror.org/05hs6h993"}],"order":1},{"firstName":"David","lastName":"Miller","email":"dxm84@psu.edu","affiliation":"Pennsylvania State University","affiliationROR":"https://ror.org/04p491231","affiliations":[{"organization":"Pennsylvania State University","identifier":"https://ror.org/04p491231"}],"orcid":"0000-0002-3011-3677","order":2}],"abstract":"\u003cp\u003eComparative studies of mortality in the wild are necessary to understand the evolution of aging, yet ectothermic tetrapods are underrepresented in this comparative landscape despite their suitability for testing evolutionary hypotheses. We present a study of aging rates and longevity across wild tetrapod ectotherms, utilizing data from 107 populations (77 species) of non-avian reptiles and amphibians. We test hypotheses of how thermoregulatory mode, temperature, protective phenotypes, and pace of life history contribute to demographic aging. Controlling for phylogeny and body size, ectotherms display a higher diversity of aging rates than endotherms and include phylogenetically widespread evidence of negligible aging. Protective phenotypes and life-history strategies further explain macroevolutionary patterns of aging. By adding ectothermic tetrapods, our comparative analyses enhance our understanding of the evolution of aging.\u003c/p\u003e\n","funders":[{"organization":"National Institute on Aging","identifierType":"ror","identifier":"https://ror.org/049v75w11","awardNumber":"3R01AG049416-03S1","awardURI":"https://reporter.nih.gov/project-details/9879881","awardDescription":"","awardTitle":"Biodemography and senescence in long-lived painted turtles"}],"fieldOfScience":"Natural sciences","methods":"\u003cp\u003eThe datasheet contains all parameters and variables used in the analyses from Reinke et al., plus some measures of aging that were not used but were calculated from the same Gompertz models. Code is included to run all analyses in Reinke et al. Details are available in the main manuscript and the supplementary information. Questions about specific mark-recapture datasets should be directed to dataset owners (see Data S1). \u003c/p\u003e\n","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1126/science.abm0151"},{"relationship":"software","identifierType":"DOI","identifier":"https://doi.org/10.5281/zenodo.5816264"}],"versionNumber":10,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.7m0cfxpsp","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":240,"downloads":54,"citations":1}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.98sf7m0zp"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.98sf7m0zp/versions"},"stash:version":{"href":"/api/v2/versions/470947"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.98sf7m0zp/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.98sf7m0zp","id":183874,"storageSize":61755,"relatedPublicationISSN":"2578-2703","title":"Data supporting: Resolving early growth variation in \u003cem\u003ePinus radiata\u003c/em\u003e: Effective indoor Phenotyping of juvenile trees","authors":[{"firstName":"Steve","lastName":"Wakelin","email":"Steve.A.Wakelin@scionresearch.com","affiliation":"Bioeconomy Science Institute","affiliationROR":"https://ror.org/03j13xx78","affiliations":[{"organization":"Bioeconomy Science Institute","identifier":"https://ror.org/03j13xx78"}],"orcid":"0000-0002-1167-8699"},{"firstName":"Bettina","lastName":"Berger","email":"bettina.berger@adelaide.edu.au","affiliation":"Adelaide University","affiliationROR":"https://ror.org/028g18b61","affiliations":[{"organization":"Australian Plant Phenomics Network","identifier":"https://ror.org/02zj7b759"},{"organization":"Adelaide University","identifier":"https://ror.org/028g18b61"}],"order":1},{"firstName":"Simeon","lastName":"Smaill","email":"simeon.smaill@ntforestry.co.nz","affiliation":"Bioeconomy Science Institute","affiliationROR":"https://ror.org/03j13xx78","affiliations":[{"organization":"Ngai Tahu Forestry"},{"organization":"Bioeconomy Science Institute","identifier":"https://ror.org/03j13xx78"}],"order":2},{"firstName":"Nathaniel","lastName":"Jewell","email":"nathaniel.jewell@adelaide.edu.au","affiliation":"Adelaide University","affiliationROR":"https://ror.org/028g18b61","affiliations":[{"organization":"Australian Plant Phenomics Network","identifier":"https://ror.org/02zj7b759"},{"organization":"Adelaide University","identifier":"https://ror.org/028g18b61"}],"order":3},{"firstName":"Chris","lastName":"Brien","email":"chris.brien@adelaide.edu.au","affiliation":"Adelaide University","affiliationROR":"https://ror.org/028g18b61","affiliations":[{"organization":"Australian Plant Phenomics Network","identifier":"https://ror.org/02zj7b759"},{"organization":"Adelaide University","identifier":"https://ror.org/028g18b61"}],"order":4}],"abstract":"\u003cp\u003eThis dataset contains time-series measurements of projected shoot area (PSA) and derived growth metrics for juvenile \u003cem\u003ePinus radiata\u003c/em\u003e clones grown under controlled indoor conditions. Plants from three clones were grown across three different growth media and imaged using an RGB-based high-throughput phenotyping platform. Growth traits, including absolute and relative growth rates, were calculated from both raw and smoothed PSA trajectories. The dataset underpins the analyses presented in 'Resolving Early Growth Variation in \u003cem\u003ePinus radiata\u003c/em\u003e: Effective Indoor Phenotyping of Juvenile Trees' and supports the evaluation of high-throughput phenotyping approaches for resolving early growth variation among clones and across growing media.\u003c/p\u003e\n","funders":[{"organization":"Ministry of Business, Innovation and Employment","identifierType":"ror","identifier":"https://ror.org/02jtq1b51","awardNumber":"C04X2002","awardDescription":"","awardTitle":"Tree Root Microbiome Programme: at the root of climate proofing forests","order":0},{"organization":"Forest Growers Levy Trust (New Zealand)","identifierType":"ror","identifier":"","awardNumber":"","awardDescription":"","awardTitle":"","order":1}],"keywords":["Pinus radiata","projected shoot area","relative growth rate","absolute growth rate","indoor phenotyping"],"fieldOfScience":"Biological sciences","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1002/ppj2.70121"}],"versionNumber":2,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.98sf7m0zp","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.7h44j1093"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.7h44j1093/versions"},"stash:version":{"href":"/api/v2/versions/470963"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.7h44j1093/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.7h44j1093","id":185723,"storageSize":16660448,"relatedPublicationISSN":"2375-2548","title":"Data and code from: Partitioning biological and physical sources of N\u003csub\u003e2\u003c/sub\u003e supersaturation in inland waters using natural \u003csup\u003e15\u003c/sup\u003eN\u003csup\u003e15\u003c/sup\u003eN signatures","authors":[{"firstName":"Yankai","lastName":"Shang","email":"shang@smail.nju.edu.cn","affiliation":"Nanjing University","affiliationROR":"https://ror.org/01rxvg760","affiliations":[{"organization":"Nanjing University","identifier":"https://ror.org/01rxvg760"}],"orcid":"0009-0003-8329-8796"},{"firstName":"Hao","lastName":"Yan","email":"yanhao@nju.edu.cn","affiliation":"Nanjing University","affiliationROR":"https://ror.org/01rxvg760","affiliations":[{"organization":"Nanjing University","identifier":"https://ror.org/01rxvg760"}],"order":1},{"firstName":"Fengtai","lastName":"Tong","email":"tongft@nju.edu.cn","affiliation":"Nanjing University","affiliationROR":"https://ror.org/01rxvg760","affiliations":[{"organization":"Nanjing University","identifier":"https://ror.org/01rxvg760"}],"order":2},{"firstName":"Huiming","lastName":"Bao","email":"bao@nju.edu.cn","affiliation":"Nanjing University","affiliationROR":"https://ror.org/01rxvg760","affiliations":[{"organization":"Nanjing University","identifier":"https://ror.org/01rxvg760"}],"order":3}],"abstract":"\u003cp\u003eInland waters are hotspots of biogenic dinitrogen (N\u003csub\u003e2\u003c/sub\u003e) emission, serving as a permanent sink for anthropogenic reactive nitrogen (N). Although N\u003csub\u003e2\u003c/sub\u003e emission is commonly inferred from N\u003csub\u003e2\u003c/sub\u003e supersaturation, the extent to which this supersaturation reflects biological contribution remains poorly understood. Here, we combine dissolved N\u003csub\u003e2\u003c/sub\u003e/Ar ratio with N\u003csub\u003e2\u003c/sub\u003e clumped isotope composition to quantify the biogenic fraction of supersaturated N\u003csub\u003e2\u003c/sub\u003e in two deep lakes with contrasting redox conditions. Our results show that biogenic N\u003csub\u003e2\u003c/sub\u003e accounts for only 59 ± 30% of the observed N\u003csub\u003e2\u003c/sub\u003e supersaturation, with the remainder coming from physical bubble injection which elevates N\u003csub\u003e2\u003c/sub\u003e/Ar ratios without contributing to N removal. Bubble-injected N\u003csub\u003e2\u003c/sub\u003e is especially pronounced in inflowing rivers, indicating that riverine bubble input can propagate into lake interiors and bias whole-lake N\u003csub\u003e2\u003c/sub\u003e budgets. These findings demonstrate that N\u003csub\u003e2\u003c/sub\u003e supersaturation is not a reliable proxy for biological N\u003csub\u003e2\u003c/sub\u003e production and imply that previous N\u003csub\u003e2\u003c/sub\u003e saturation-based studies may largely have overestimated N removal capacities of inland aquatic ecosystems.\u003c/p\u003e\n","funders":[{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"No. 42550124","awardDescription":"","awardTitle":"","order":0},{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"No. 42494851","awardDescription":"","awardTitle":"","order":1},{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"No. W2441015","awardDescription":"","awardTitle":"","order":2},{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"No. 0206/14380232","awardDescription":"","awardTitle":"","order":3}],"keywords":["Nitrogen cycle","Denitrification","Fresh water"],"fieldOfScience":"Earth and related environmental sciences","versionNumber":7,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.7h44j1093","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.m63xsj4jh"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.m63xsj4jh/versions"},"stash:version":{"href":"/api/v2/versions/470975"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.m63xsj4jh/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.m63xsj4jh","id":190503,"storageSize":3050149,"title":"Tribal transportation transitions: A preliminary study in California","authors":[{"firstName":"Elisabeth","lastName":"Middleton","email":"brmiddleton@ucdavis.edu","affiliation":"University of California, Davis","affiliationROR":"https://ror.org/05rrcem69","affiliations":[{"organization":"University of California, Davis","identifier":"https://ror.org/05rrcem69"}],"orcid":"0000-0002-7403-5447"},{"firstName":"Kealohi","lastName":"Sabate","email":"ksabate@ucdavis.edu","affiliation":"University of California, Davis","affiliationROR":"https://ror.org/05rrcem69","affiliations":[{"organization":"University of California, Davis","identifier":"https://ror.org/05rrcem69"}],"order":1}],"abstract":"\u003cp\u003eThe largest Native population and the second-largest number of Tribal governments are located in the State of California. Tribal lands in California are ecologically diverse, from southern deserts to northwestern temperate rainforests. Transportation issues are unfortunately common in Native communities, including limited paved roads, poor road conditions, limited public transportation options, high fuel costs, and limited facilities for pedestrians and cyclists. Research and investments in transportation efficiency and infrastructure often do not reflect the specific context and needs in Indian Country. Similarly, opportunities to transition to “sustainable transportation,” often defined as reduced fossil fuel modes of transport, are not necessarily linked to needs and feasibility in Native communities. This pilot study began with targeted semi-structured interviews with tribal environmental leaders to inform survey design and outreach. Graduate student researchers in Native American Studies and Civil and Environmental Engineering led a comprehensive literature review and examination of funded tribal sustainable transportation projects in California. A survey on interest in, and barriers and opportunities facing tribes interested in sustainable transportation options, was distributed to tribal environmental and public works staff via email between February and April 2025, and to tribal staff and citizens in person in April 2026. Our goals were to contribute to identifying the challenges and opportunities facing Tribal Nations in California, to consider a transition to more sustainable transportation systems, and to provide data that tribes might find useful as they work to fund and build sustainable transportation programs. \u003c/p\u003e\n","funders":[{"organization":"U.S. Department of Transportation","identifierType":"ror","identifier":"","awardNumber":"A24-3016","awardDescription":"","awardTitle":"","order":0}],"keywords":["Native American people","Transportation","Sustainability science"],"fieldOfScience":"Social sciences","hsiStatement":"IRB approval for human subjects research was obtained via IRB 2257082-1. Data is aggregated from survey responses, no individual identifying information for participants is included.","versionNumber":6,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.m63xsj4jh","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.bk3j9kdhw"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.bk3j9kdhw/versions"},"stash:version":{"href":"/api/v2/versions/470438"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.bk3j9kdhw/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.bk3j9kdhw","id":111029,"storageSize":754784,"relatedPublicationISSN":"0012-9658","title":"Data from: Interspecific differences in nitrogen form acquisition strategies contribute to species dominance","authors":[{"firstName":"Ming","lastName":"Guan","email":"guanmingtzc@163.com","affiliation":"Shenyang Agricultural University","affiliationROR":"https://ror.org/01n7x9n08","affiliations":[{"organization":"Taizhou University","identifier":"https://ror.org/04fzhyx73"},{"organization":"Shenyang Agricultural University","identifier":"https://ror.org/01n7x9n08"}],"orcid":"0009-0006-9734-2219","order":0},{"firstName":"Xiao-Cui","lastName":"Pan","email":"panxiaocuitzc@163.com","affiliation":"Taizhou University","affiliationROR":"https://ror.org/04fzhyx73","affiliations":[{"organization":"Taizhou University","identifier":"https://ror.org/04fzhyx73"}],"order":1},{"firstName":"Jian-Kun","lastName":"Sun","email":"sjksyau@126.com","affiliation":"Shenyang Agricultural University","affiliationROR":"https://ror.org/01n7x9n08","affiliations":[{"organization":"Shenyang Agricultural University","identifier":"https://ror.org/01n7x9n08"}],"order":2},{"firstName":"Ji-Xin","lastName":"Chen","email":"cjx453129785@126.com","affiliation":"Shenyang Agricultural University","affiliationROR":"https://ror.org/01n7x9n08","affiliations":[{"organization":"Shenyang Agricultural University","identifier":"https://ror.org/01n7x9n08"}],"order":3},{"firstName":"Xiao-Lin","lastName":"Wei","email":"weixiaolinsyau@163.com","affiliation":"Shenyang Agricultural University","affiliationROR":"https://ror.org/01n7x9n08","affiliations":[{"organization":"Shenyang Agricultural University","identifier":"https://ror.org/01n7x9n08"}],"order":4},{"firstName":"Bernhard","lastName":"Schmid","email":"bernhard.schmid@uzh.ch","affiliation":"University of Zurich","affiliationROR":"https://ror.org/02crff812","affiliations":[{"organization":"University of Zurich","identifier":"https://ror.org/02crff812"}],"orcid":"0000-0002-8430-3214","order":5},{"firstName":"Michel","lastName":"Loreau","email":"michel.loreau@gmail.com","affiliation":"Centre National pour la Recherche Scientifique et Technique (CNRST)","affiliationROR":"https://ror.org/00675rp98","affiliations":[{"organization":"Centre National pour la Recherche Scientifique et Technique (CNRST)","identifier":"https://ror.org/00675rp98"}],"orcid":"0000-0002-0122-495X","order":6},{"firstName":"Yu-Long","lastName":"Feng","email":"fyl@syau.edu.cn","affiliation":"Shenyang Agricultural University","affiliationROR":"https://ror.org/01n7x9n08","affiliations":[{"organization":"Southwest Forestry University","identifier":"https://ror.org/03dfa9f06"},{"organization":"Shenyang Agricultural University","identifier":"https://ror.org/01n7x9n08"}],"order":7}],"abstract":"\u003cp\u003ePlant’s ability to use prevalent or less prevalent soil nitrogen (N) forms may affect their dominance within vegetation types, and these partitioning-driven changes in dominance may facilitate species co-existence. However, the mechanisms underlying these processes remain unclear, particularly given the strong influence of altitude on soil N forms, which in turn affects plant N acquisition strategy. In this study, we first determined the effects of preference and plasticity in N form uptake on partitioning of soil N forms and species dominance, and then assessed the relative importance of these two N form use strategies for 19 dominant and non-dominant species in three vegetation types along an altitudinal gradient on Changbai Mountain, northeast China. To achieve this, we measured dominance, the contents of different N forms in rhizosphere soils, their proportional contributions to leaf N, and N form uptake preference and plasticity for these 19 species. Our results show significant interspecific differences in the proportional contributions of different soil N forms to leaf N within all three vegetation types, providing a novel mechanism underlying niche differentiation among plants. Species dominance was positively associated with the proportional contributions of soil dissolved organic N (the most prevalent N form) and the main inorganic N form to leaf N, while negatively with that of the subordinate inorganic N. These associations were not altered by the altitude-driven changes in the absolute and proportional contents of different soil N forms, suggesting a potentially widespread phenomenon. Both preference and plasticity in N form uptake contributed to the proportional contributions of different N forms to leaf N, and therefore to species dominance and co-existence within vegetation types. Furthermore, N form preference was more critical for non-dominant relative to dominant species and at high relative to low altitude, while N form uptake plasticity was more important for dominant species and at low altitude. Our study provides robust evidence for the interspecific niche differentiation in N form uptake, contributing to species dominance and co-existence within vegetation types, and reveals the mechanisms (plasticity and preference) underlying the association between species dominance and the uptakes of different N forms.\u003c/p\u003e","funders":[{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"32001238","awardDescription":"","order":1},{"organization":"Zhejiang Provincial Natural Science Foundation","identifierType":"ror","identifier":"https://ror.org/04aqat463","awardNumber":"LQ20C030004","awardDescription":"","order":4},{"organization":"National Key R\u0026D Program of China","identifierType":"crossref_funder_id","identifier":"","awardNumber":"2023YFC2604500","awardDescription":"","order":0},{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"32271741","awardDescription":"","order":3},{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"32171666","awardDescription":"","order":2}],"keywords":["15N natural abundance","niche differentiation of nitrogen forms","nitrogen form preference","plasticity in nitrogen form uptake","species co-existence","species dominance","utilization of different nitrogen forms"],"fieldOfScience":"Biological sciences","methods":"\u003cp\u003e\u003cstrong\u003eStudy sites\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThis study was conducted on the north slope of Changbai Mountain, Jilin Province, northeast China (41°23′ – 42°36′ N; 126°55′ – 129°00′ E). This region has a typical continental temperate monsoon climate, with long cold winters and short warm summers. From the lower part of the mountain at 740 m to the summit at 2691 m, the mean annual temperature decreases from 2.8 to –7.3\u003csup\u003eo\u003c/sup\u003eC and the mean annual precipitation increases from 750 to 1340 mm (He et al., \u003ca href=\"#He\"\u003e2005\u003c/a\u003e).\u003c/p\u003e\n\u003cp\u003eKorean pine and broadleaved mixed forest (KPBL), Erman’s birch forest (EB), and alpine tundra (AT) were selected as study plant communities based on their prevalent forms of soil N. In KPBL, dissolved inorganic N (DIN) accounts for a large proportion of total dissolved soil N (TDN), and NO\u003csub\u003e3\u003c/sub\u003e\u003csup\u003e- \u003c/sup\u003eis the prevailing inorganic N form; in EB, DIN also accounts for a large proportion of soil TDN, but NH\u003csub\u003e4\u003c/sub\u003e\u003csup\u003e+ \u003c/sup\u003eis the predominant inorganic N form; in AT, however, DON is the principal soil N form (CERN; http://www.cerndata.ac.cn/). Similar altitudinal changes in N forms were also found in our study (Appendix S1: Figure S1). The main properties of the three vegetation types are summarized in Appendix S1: Table S1. The sample plots are located in a national nature reserve, and thus human interference is negligible.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eStudy species\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eIn mid-July of 2018, three 30 × 30 m plots (\u0026gt; 20 m apart from one another) were randomly established in EB and AT, respectively. First, we investigated the background information such as altitude, slope degree and vegetation cover in each plot. Second, all woody plants [diameter at breast height (DBH) ≥ 1 cm] were identified. Third, we measured the number, DBH, basal area, crown width, and height of each individual of each tree species, and the number, height and cover of each individual of each shrub species in each plot. Finally, we calculated relative density (RD\u003csub\u003ey\u003c/sub\u003e) and relative frequency (RF) for the tree and shrub species, relative dominance (RD\u003csub\u003ee\u003c/sub\u003e) for the tree species, relative cover (RC) for the shrub species, and then the importance values (IV) for the tree and shrub species in each plot based on Zhang et al. (\u003ca href=\"#Zhang1995\"\u003e1995\u003c/a\u003e) and Asigbaase et al. (\u003ca href=\"#Asigbaase\"\u003e2019\u003c/a\u003e). The importance value was used to quantified species dominance in our study.\u003c/p\u003e\n\u003cp\u003e        IV of tree = (RD\u003csub\u003ey\u003c/sub\u003e + RF + RD\u003csub\u003ee\u003c/sub\u003e) / 300……. ………………………………….……………(1)\u003c/p\u003e\n\u003cp\u003e        IV of shrub = (RD\u003csub\u003ey\u003c/sub\u003e + RF + R\u003csub\u003eC\u003c/sub\u003e) / 300………………………………………………..……(2)\u003c/p\u003e\n\u003cp\u003e        RD\u003csub\u003ey\u003c/sub\u003e = number of individuals of the species / total number of individuals of all species × 100……………………………..………………………………………………………………(3)\u003c/p\u003e\n\u003cp\u003e        RF = frequency of the species / sum frequency of all species × 100……………………..(4)\u003c/p\u003e\n\u003cp\u003e        RD\u003csub\u003ee\u003c/sub\u003e = basal area of the tree species / total basal area of all tree species × 100…………..(5)\u003c/p\u003e\n\u003cp\u003e        RC = cover of the shrub species / total cover of all shrub species × 100……………..…..(6)\u003c/p\u003e\n\u003cp\u003eFor KPBL, three 30 × 30 m plots were randomly established in a 25-ha KPBL permanent plot. In the permanent plot, only 17 woody plant species had more than 10 individuals per hectare, which accounted for more than 95% of the individuals of all woody plants (Hao et al., \u003ca href=\"#Hao\"\u003e2008\u003c/a\u003e). Our studied species were selected from these 17 species using the following criteria: individuals \u0026gt; 3 in each plot; and only one species was randomly selected when more than one from the same family had similar numbers of individuals in each plot. Ultimately, 10 species were selected, and their importance values were calculated using the methods described above. These species together accounted for more than 80% of the total aboveground biomass (Li et al., \u003ca href=\"#Li\"\u003e1981\u003c/a\u003e).\u003c/p\u003e\n\u003cp\u003eIn total, 19 woody plant species were studied, and only one occurred in more than one vegetation types, i.e., \u003cem\u003eRhododendron aureum\u003c/em\u003e in both EB and AT (Appendix S1: Table S2). The species were divided into dominant (≥ 3) and non-dominant (\u0026lt; 3) according to their importance values (Avolio et al., \u003ca href=\"#Avolio\"\u003e2019\u003c/a\u003e). The numbers of the dominant and non-dominant species are 6 and 4, 3 and 3, and 2 and 1 in KPBL, EB, and AT, respectively (Appendix S1: Table S2).\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eLeaf and soil sampling, measurements and calculations\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eIn August of 2018, 10 fully developed, intact and healthy leaves or bunches of current-year needles on the south side of the upper canopy were randomly collected from each of the three sampling individuals for each studied species in each plot. The leaves or needles were collected using tree pruners when the sampling individuals were short. For high trees, we climbed up to collect the leaves and needles. The leaves or needles from the same species in each of the three plots were mixed as one sample. This sampling procedure ensured a representative and homogeneous sample, reducing potential effects of intraspecific differences within-plot.\u003c/p\u003e\n\u003cp\u003eRhizosphere soils were also collected from the sample individuals mentioned above. We first carefully removed the litter and humus layers from the soil surface at four sides (east, south, west and north) around each sample tree (≈ 1 m from the trunk). Then, fine roots (diameter \u0026lt; 2 mm) were dug out at each side, and rhizosphere soils were collected using a hand-shaking method (Guan et al., \u003ca href=\"#Guan2023\"\u003e2023\u003c/a\u003e). Soils from the same species in each plot were thoroughly mixed as one sample. The soils were immediately put into an ice box, transported to the laboratory of the Research Station of Changbai Mountain Forest Ecosystems, Chinese Academy of Sciences, passed through a 2 mm sieve, and stored at 4\u003csup\u003eo\u003c/sup\u003eC until measurements.\u003c/p\u003e\n\u003cp\u003eLeaf total N concentration and δ\u003csup\u003e15\u003c/sup\u003eN were measured using an element analyzer-stable isotopic mass spectrometer (Flash EA 1112 HT-Delta V Advantages, Thermo Fisher Scientific, USA). The contents of DIN (NH\u003csub\u003e4\u003c/sub\u003e\u003csup\u003e+\u003c/sup\u003e and NO\u003csub\u003e3\u003c/sub\u003e\u003csup\u003e-\u003c/sup\u003e), DON, and TDN in rhizosphere soil of each sample species were measured using the standard method commonly used in literature (Guan et al., \u003ca href=\"#Knapp\"\u003e2023\u003c/a\u003e; Zhang et al., \u003ca href=\"#Zhang2018\"\u003e2018\u003c/a\u003e). Soil water content was measured using the oven-drying method. The δ\u003csup\u003e15\u003c/sup\u003eN values of soil NH\u003csub\u003e4\u003c/sub\u003e\u003csup\u003e+\u003c/sup\u003e, NO\u003csub\u003e3\u003c/sub\u003e\u003csup\u003e-\u003c/sup\u003e, and TDN (δ\u003csup\u003e15\u003c/sup\u003eN\u003csub\u003eNH4\u003c/sub\u003e\u003csup\u003e+\u003c/sup\u003e, δ\u003csup\u003e15\u003c/sup\u003eN\u003csub\u003eNO3\u003c/sub\u003e\u003csup\u003e-\u003c/sup\u003e, and δ\u003csup\u003e15\u003c/sup\u003eN\u003csub\u003eTDN\u003c/sub\u003e) were measured using the chemical method (Liu et al., \u003ca href=\"#Liu2014a\"\u003e2014\u003c/a\u003e), azide method (Tu et al., \u003ca href=\"#Tu\"\u003e2016\u003c/a\u003e), and high-temperature catalytic oxidation techniques performed with a total organic carbon analyzer-stable isotope ratio mass spectrometer (Iso TOC cube-isoprime100, Elementar, Germany), respectively. The δ\u003csup\u003e15\u003c/sup\u003eN value of DON (δ\u003csup\u003e15\u003c/sup\u003eN\u003csub\u003eDON\u003c/sub\u003e) was calculated as the mass-weighted difference between δ\u003csup\u003e15\u003c/sup\u003eN\u003csub\u003eTDN \u003c/sub\u003eversus δ\u003csup\u003e15\u003c/sup\u003eN\u003csub\u003eNH4\u003c/sub\u003e\u003csup\u003e+\u003c/sup\u003e and δ\u003csup\u003e15\u003c/sup\u003eN\u003csub\u003eNO3\u003c/sub\u003e\u003csup\u003e-\u003c/sup\u003e.\u003c/p\u003e\n\u003cp\u003eThe measurement data mentioned above were used to estimate the proportional contributions of soil NO\u003csub\u003e3\u003c/sub\u003e\u003csup\u003e-\u003c/sup\u003e, NH\u003csub\u003e4\u003c/sub\u003e\u003csup\u003e+, \u003c/sup\u003eand DON to leaf N (\u003cem\u003ef\u003c/em\u003e\u003csub\u003eNO3\u003c/sub\u003e\u003csup\u003e-\u003c/sup\u003e, \u003cem\u003ef\u003c/em\u003e\u003csub\u003eNH4\u003c/sub\u003e\u003csup\u003e+, \u003c/sup\u003eand \u003cem\u003ef\u003c/em\u003e\u003csub\u003eDON\u003c/sub\u003e; %) (Houlton et al., \u003ca href=\"#Houlton\"\u003e2007\u003c/a\u003e; Stock et al., \u003ca href=\"#Stock\"\u003e2018\u003c/a\u003e). The effects of possible isotope fractionation during within-plant N allocation and/or N transport from mycorrhizal fungi to host plants were taken into account (Houlton et al., \u003ca href=\"#Houlton\"\u003e2007\u003c/a\u003e; Zhu et al., \u003ca href=\"#Zhu\"\u003e2019\u003c/a\u003e). Plant preferential uptake for soil NO\u003csub\u003e3\u003c/sub\u003e\u003csup\u003e-\u003c/sup\u003e, NH\u003csub\u003e4,\u003c/sub\u003e\u003csup\u003e+ \u003c/sup\u003eand DON (\u003cem\u003eβ\u003c/em\u003e\u003csub\u003eNO3\u003c/sub\u003e\u003csup\u003e-\u003c/sup\u003e, \u003cem\u003eβ\u003c/em\u003e\u003csub\u003eNH4,\u003c/sub\u003e\u003csup\u003e+\u003c/sup\u003e and \u003cem\u003eβ\u003c/em\u003e\u003csub\u003eDON\u003c/sub\u003e) were estimated by comparing their proportional contribution to leaf N and their relative contents in soil (Guan et al., \u003ca href=\"#Guan2023\"\u003e2023\u003c/a\u003e; Zhang et al., \u003ca href=\"#Zhang2018\"\u003e2018\u003c/a\u003e). To estimate plasticity in N form uptake, percentage similarity between plant uptake pattern of different N forms and their availability pattern in rhizosphere soil (percentage similarity) was determined for each species in each plot based on McKane et al. (\u003ca href=\"#McKane\"\u003e2002\u003c/a\u003e) and Guan et al. (\u003ca href=\"#Guan2023\"\u003e2023\u003c/a\u003e).\u003c/p\u003e\n\u003cp\u003eFor detailed measurement and calculation methods please see Appendix S1: Section S1, and mean value of three plots was reported for each variable in the results section.\u003c/p\u003e","usageNotes":"\u003cdiv class=\"t-landing__text-wall \"\u003e\n\u003cp\u003eThe data files are .csv files, so they can be opened in many programs. For example, Excel.\u003c/p\u003e\n\u003cp\u003eThe data files are analyzed using code files.\u003c/p\u003e\n\u003cp\u003eThe code files are .R files, so they can be opened in R.\u003c/p\u003e\n\u003c/div\u003e","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1002/ecy.70137"}],"versionNumber":11,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.bk3j9kdhw","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":72,"downloads":19,"citations":1}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.z612jm6v3"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.z612jm6v3/versions"},"stash:version":{"href":"/api/v2/versions/471059"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.z612jm6v3/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.z612jm6v3","id":196179,"storageSize":453383,"title":"Diagnostic ultrasound–guided focused ultrasound–induced noninvasive, reversible peripheral nerve blockade in an in vivo model of acute pain: A proof-of-concept study","authors":[{"firstName":"Namrata","lastName":"Sangwan","affiliation":"Stanford Medicine","affiliationROR":"https://ror.org/03mtd9a03","affiliations":[{"organization":"Stanford Medicine","identifier":"https://ror.org/03mtd9a03"}],"orcid":"0000-0001-8880-4641","order":0,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Writing – original draft","identifier":"https://credit.niso.org/contributor-roles/writing-original-draft"}]},{"firstName":"Alyssa Mae","lastName":"Flippen","affiliation":"Stanford Medicine","affiliationROR":"https://ror.org/03mtd9a03","affiliations":[{"organization":"Stanford Medicine","identifier":"https://ror.org/03mtd9a03"}],"orcid":"0000-0003-4460-8723","order":1,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"}]},{"firstName":"Michael","lastName":"Klukinov","affiliation":"Stanford Medicine","affiliationROR":"https://ror.org/03mtd9a03","affiliations":[{"organization":"Stanford Medicine","identifier":"https://ror.org/03mtd9a03"}],"orcid":"0000-0002-5229-6777","order":2,"roles":[{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Cholawat","lastName":"Pacharinsak","affiliation":"Stanford Medicine","affiliationROR":"https://ror.org/03mtd9a03","affiliations":[{"organization":"Stanford Medicine","identifier":"https://ror.org/03mtd9a03"}],"orcid":"0009-0001-2589-1992","order":3,"roles":[{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"N. Christopher","lastName":"Chaggares","affiliation":"SONELE Inc.","affiliations":[{"organization":"SONELE Inc."}],"order":4,"roles":[{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Zahra","lastName":"Torbatian","affiliation":"SONELE Inc.","affiliations":[{"organization":"SONELE Inc."}],"order":5,"roles":[{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Project administration","identifier":"https://credit.niso.org/contributor-roles/project-administration"}]},{"firstName":"Kim Butts","lastName":"Pauly","affiliation":"Stanford Medicine","affiliationROR":"https://ror.org/03mtd9a03","affiliations":[{"organization":"Stanford Medicine","identifier":"https://ror.org/03mtd9a03"}],"orcid":"0000-0002-6281-2771","order":6,"roles":[{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"David","lastName":"Yeomans","email":"yeomans@stanford.edu","affiliation":"Stanford Medicine","affiliationROR":"https://ror.org/03mtd9a03","affiliations":[{"organization":"Stanford Medicine","identifier":"https://ror.org/03mtd9a03"}],"order":7,"roles":[{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Thomas","lastName":"Anderson","email":"tanders0@stanford.edu","affiliation":"Stanford Medicine","affiliationROR":"https://ror.org/03mtd9a03","affiliations":[{"organization":"Stanford Medicine","identifier":"https://ror.org/03mtd9a03"}],"orcid":"0000-0002-6004-6102","order":8,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"},{"role":"Writing – original draft","identifier":"https://credit.niso.org/contributor-roles/writing-original-draft"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Project administration","identifier":"https://credit.niso.org/contributor-roles/project-administration"}]}],"abstract":"\u003cp\u003eThis dataset contains longitudinal behavioral measurements from a preclinical investigation evaluating diagnostic ultrasound-guided focused ultrasound (dUS-FUS) as a noninvasive method of inducing reversible peripheral nerve blockade in a rat model of acute incisional pain. Adult Sprague–Dawley rats were assigned to an intervention group receiving transcutaneous dUS-FUS application to the sciatic nerve followed by hind paw incision (n = 12) or a control group receiving hind paw incision alone (n = 6). Behavioral outcomes were assessed before treatment and at multiple time points over 23 weeks following treatment.\u003c/p\u003e\n\u003cp\u003eThe dataset includes measurements of mechanical nociceptive withdrawal thresholds (Randall–Selitto test, grams), thermal withdrawal latencies (modified Hargreaves test, seconds), hind paw flexion responses (grasp reflex), and hind paw extension responses (startle reflex). Flexion and extension were scored on an ordinal scale of 0 (absent), 0.5 (partial), or 1 (full response). These measurements characterize longitudinal changes in nociceptive sensitivity, motor function, and non-nociceptive sensory function following dUS-FUS application. The dataset supports comparisons between intervention and control groups, evaluation of the duration and reversibility of behavioral changes, and analysis of recovery trajectories.\u003c/p\u003e\n\u003cp\u003eThe associated study demonstrated increased mechanical withdrawal thresholds and thermal withdrawal latencies following dUS-FUS treatment, accompanied by transient reductions in hind paw flexion and extension responses, with eventual recovery of all measured behaviors. These data may be reused to investigate peripheral nerve neuromodulation, evaluate longitudinal behavioral responses to focused ultrasound, compare experimental analgesic interventions, and inform the development and optimization of noninvasive peripheral nerve blockade techniques. The dataset was generated through animal research and contains no human participant information or personally identifiable data. Reuse should acknowledge the original publication and comply with applicable repository licensing requirements.\u003c/p\u003e\n","funders":[{"organization":"National Institute of Biomedical Imaging and Bioengineering","identifierType":"ror","identifier":"https://ror.org/00372qc85","awardNumber":"1R18EB035005-01","awardURI":"https://reporter.nih.gov/project-details/10740796","awardDescription":"","awardTitle":"Development of A Focused Ultrasound Device for Noninvasive, Peripheral Nerve Blockade to Manage Acute Pain"}],"keywords":["Pain","Acute pain management","Local and regional anesthesia"],"fieldOfScience":"Medical engineering","relatedWorks":[{"relationship":"preprint","identifierType":"DOI","identifier":"https://doi.org/10.64898/2026.05.21.727004"},{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1097/aln.0000000000006125"},{"relationship":"article","identifierType":"DOI","identifier":"https://doi.org/10.1213/ANE.0000000000008386"}],"versionNumber":4,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.z612jm6v3","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jsxksn0t2"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jsxksn0t2/versions"},"stash:version":{"href":"/api/v2/versions/471052"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jsxksn0t2/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.jsxksn0t2","id":196116,"storageSize":1059695,"relatedPublicationISSN":"0021-8790","title":"Data from: Beggars can’t be choosers: Competitive dominance and size-dependent resource investment jointly constrain partner associations in a multispecies mutualism","authors":[{"firstName":"Annika S.","lastName":"Nelson","email":"annika.nelson@tcu.edu","affiliation":"Rocky Mountain Biological Laboratory","affiliationROR":"https://ror.org/030tcms06","affiliations":[{"organization":"Texas Christian University","identifier":"https://ror.org/054b0b564"},{"organization":"Rocky Mountain Biological Laboratory","identifier":"https://ror.org/030tcms06"}],"orcid":"0000-0002-1086-0077","roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Writing – original draft","identifier":"https://credit.niso.org/contributor-roles/writing-original-draft"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Nhan T. T.","lastName":"Nguyen","email":"nhanthng@yahoo.com","affiliation":"Rocky Mountain Biological Laboratory","affiliationROR":"https://ror.org/030tcms06","affiliations":[{"organization":"Rocky Mountain Biological Laboratory","identifier":"https://ror.org/030tcms06"}],"order":1,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Spencer","lastName":"Levings","email":"s.levings@tcu.edu","affiliation":"Texas Christian University","affiliationROR":"https://ror.org/054b0b564","affiliations":[{"organization":"Texas Christian University","identifier":"https://ror.org/054b0b564"}],"orcid":"0009-0009-0309-6865","order":2,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Parker","lastName":"Hawk","email":"parkernhawk@gmail.com","affiliation":"Rocky Mountain Biological Laboratory","affiliationROR":"https://ror.org/030tcms06","affiliations":[{"organization":"Rocky Mountain Biological Laboratory","identifier":"https://ror.org/030tcms06"}],"order":3,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Kailen A.","lastName":"Mooney","email":"","affiliation":"University of California, Irvine","affiliationROR":"https://ror.org/04gyf1771","affiliations":[{"organization":"University of California, Irvine","identifier":"https://ror.org/04gyf1771"},{"organization":"Rocky Mountain Biological Laboratory","identifier":"https://ror.org/030tcms06"}],"order":4,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]}],"abstract":"\u003cp\u003eCompetition theory predicts that dominant species should gain preferential access to more valuable resources, whereas optimal foraging theory predicts that organisms should invest more heavily in higher-value resources. Together, these theories predict that dominant species should exhibit stronger value-dependent investment than subordinate species, consistent with the adage that “beggars can’t be choosers.”\u003c/p\u003e\n\u003cp\u003eIn mutualisms, where partners differ greatly in the rewards they provide, it remains unknown how competitive hierarchies influence associations with partners that vary in value.\u003c/p\u003e\n\u003cp\u003eWe tested whether competitive dominance and value-dependent investment jointly determine partner associations in an ant-aphid mutualism, focusing on resource quantity as a key axis of value. We measured ant responses to variation in resource quantity using experimental sugar baits and repeated censuses of wild aphid colonies spanning a range of sizes.\u003c/p\u003e\n\u003cp\u003eThe dominant ant preferentially recruited to larger baits and tended the largest aphid colonies, whereas subordinate ants increased recruitment with bait size only when the dominant ant was excluded. Aphid colony size also influenced behavioral investment in tending: the dominant ant showed strong increases in tending initiation, continuation, and forager allocation with colony size, while subordinate ant taxa responded more weakly.\u003c/p\u003e\n\u003cp\u003eTogether, these results demonstrate that aphid colonies function as a graded resource whose size shapes competition among ants, leading dominant taxa to monopolize larger aphid colonies while constraining subordinate taxa to smaller ones. More broadly, these findings show that partner associations emerge from the interaction between competitive dominance and value-dependent investment, integrating classical competition and optimal foraging theories to explain partner associations in a multispecies mutualism.\u003c/p\u003e\n","funders":[{"organization":"Division of Graduate Education","identifierType":"ror","identifier":"https://ror.org/00whkrf32","awardNumber":"1321846","awardDescription":"","awardTitle":"Graduate Research Fellowship Program (GRFP)","order":0},{"organization":"Division of Biological Infrastructure","identifierType":"ror","identifier":"https://ror.org/04qn9mx93","awardNumber":"1755522","awardDescription":"","awardTitle":"REU Site:  Research Training in Place-Based Field Research","order":1},{"organization":"Rocky Mountain Biological Laboratory","identifierType":"ror","identifier":"https://ror.org/030tcms06","awardNumber":"","awardDescription":"","awardTitle":"Graduate Research Fellowship","order":2}],"keywords":["Ants","Aphids","competition","colony size","dominance","Mutualism","resource quantity","resource value"],"fieldOfScience":"Biological sciences","versionNumber":2,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.jsxksn0t2","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.79cnp5jcw"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.79cnp5jcw/versions"},"stash:version":{"href":"/api/v2/versions/471054"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.79cnp5jcw/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.79cnp5jcw","id":196154,"storageSize":1596476,"relatedPublicationISSN":"0908-8857","title":"Data from: Passive acoustic monitoring reveals annual variability in distribution and habitat use of a nomadic songbird, \u003cem\u003eLoxia curvirostra\u003c/em\u003e (red crossbill)","authors":[{"firstName":"Morgan","lastName":"Sherwood","email":"morgansherwood221@gmail.com","affiliation":"Whitman College","affiliationROR":"https://ror.org/05axv8155","affiliations":[{"organization":"Whitman College","identifier":"https://ror.org/05axv8155"}],"order":0,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Writing – original draft","identifier":"https://credit.niso.org/contributor-roles/writing-original-draft"}]},{"firstName":"Adam","lastName":"Duarte","email":"adam.duarte@usda.gov","affiliation":"Pacific Northwest Research Station","affiliationROR":"https://ror.org/02s42ys89","affiliations":[{"organization":"Pacific Northwest Research Station","identifier":"https://ror.org/02s42ys89"}],"orcid":"0000-0003-0034-1764","order":1,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Project administration","identifier":"https://credit.niso.org/contributor-roles/project-administration"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Jamie","lastName":"Ratliff","email":"jamie.ratliff@usda.gov","affiliation":"US Forest Service","affiliationROR":"https://ror.org/03zmjc935","affiliations":[{"organization":"US Forest Service","identifier":"https://ror.org/03zmjc935"}],"order":2,"roles":[{"role":"Project administration","identifier":"https://credit.niso.org/contributor-roles/project-administration"}]},{"firstName":"Ben","lastName":"Vernasco","email":"benvernasco@gmail.com","affiliation":"Whitman College","affiliationROR":"https://ror.org/05axv8155","affiliations":[{"organization":"Whitman College","identifier":"https://ror.org/05axv8155"}],"orcid":"0000-0002-5561-7273","order":3,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Software","identifier":"https://credit.niso.org/contributor-roles/software"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"},{"role":"Writing – original draft","identifier":"https://credit.niso.org/contributor-roles/writing-original-draft"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]}],"abstract":"\u003cp\u003eThe dynamic distributions of nomadic species challenge monitoring efforts important to understanding their ecology and informing their conservation. We overcome these challenges using passive acoustic monitoring and Bayesian occupancy models. We focus on a nomadic, conifer cone specialist, the Red Crossbill, during a highly flexible life stage when individuals are either colonizing an area or wandering in search of areas to breed. We processed 87,925 hours of audio collected from 332 sites in the northern Blue Mountains of Oregon from April–August of 2022 and 2023 using BirdNETv2.4. BirdNET generated 228,833 and 33,082 Red Crossbill detections in 2022 and 2023, respectively. We manually reviewed 9,865 Red Crossbill detections and used Platt scaling to identify true positives within unreviewed detections. We fit Bayesian multi-state occupancy models to understand habitat covariates associated with site use and sites with high amounts of activity (i.e., high site use). We also estimated site colonization and abandonment using Bayesian dynamic occupancy models. We estimated the proportion of sites used and sites with high use to be 0.75 [95% credible intervals: 0.71, 0.77] and 0.23 [0.20, 0.26] in 2022 and 0.43 [0.30, 0.56] and 0.32 [0.21, 0.44] in 2023. We found more evidence for non-random habitat use in a year with relatively more detections and higher vocalization densities within detections. Site colonization probability in 2022 and 2023 was 0.46 [0.26, 0.67] and 0.09 [0.04, 0.15], respectively, whereas site abandonment probabilities in 2022 and 2023 were 0.01 [0.003, 0.02] and 0.06 [0.01, 0.14], respectively. Red Crossbills were therefore more likely to colonize sites in 2022 and abandon sites in 2023. We demonstrate how passive acoustic monitoring and different parameterizations of occupancy models can overcome the challenges associated with monitoring and understanding the movement behavior and habitat use of nomadic animals during highly transitory life stages.\u003c/p\u003e\n","funders":[{"organization":"US Forest Service","identifierType":"ror","identifier":"https://ror.org/03zmjc935","awardNumber":"","awardDescription":"","awardTitle":"","order":0},{"organization":"Pacific Northwest Research Station","identifierType":"ror","identifier":"https://ror.org/02s42ys89","awardNumber":"","awardDescription":"","awardTitle":"","order":1},{"organization":"Oregon Department of Fish and Wildlife","identifierType":"ror","identifier":"https://ror.org/00w64gh11","awardNumber":"","awardDescription":"","awardTitle":"","order":2}],"keywords":["Conifers","Animal migration","Remote sensing","hierarchical modeling","species distributions"],"fieldOfScience":"Natural sciences","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1002/jav.03725"}],"versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.79cnp5jcw","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.0rxwdbscz"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.0rxwdbscz/versions"},"stash:version":{"href":"/api/v2/versions/471080"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.0rxwdbscz/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.0rxwdbscz","id":163821,"storageSize":571918396,"relatedPublicationISSN":"1939-5582","title":"Dataset for: Increased trail density negatively impacts breeding bird diversity on Colorado public lands due partly to human activity","authors":[{"firstName":"Quresh","lastName":"Latif","email":"quresh.latif@birdconservancy.org","affiliation":"Bird Conservancy of the Rockies","affiliations":[{"organization":"Bird Conservancy of the Rockies"},{"organization":"Bird Conservancy of the Rockies","identifier":"https://ror.org/027kj5136"}],"orcid":"0000-0003-2925-5042","order":0},{"firstName":"Liza","lastName":"Rossi","email":"","affiliation":"Colorado Parks and Wildlife","affiliationROR":"https://ror.org/032xegc37","affiliations":[{"organization":"Colorado Parks and Wildlife","identifier":"https://ror.org/032xegc37"}],"order":1},{"firstName":"Matthew","lastName":"McLaren","email":"","affiliation":"Bird Conservancy of the Rockies","affiliations":[{"organization":"Bird Conservancy of the Rockies"},{"organization":"Bird Conservancy of the Rockies","identifier":"https://ror.org/027kj5136"}],"order":2},{"firstName":"Jennifer","lastName":"Timmer","email":"","affiliation":"Bird Conservancy of the Rockies","affiliations":[{"organization":"Bird Conservancy of the Rockies"},{"organization":"Bird Conservancy of the Rockies","identifier":"https://ror.org/027kj5136"}],"order":3},{"firstName":"Melissa","lastName":"Dressen","email":"","affiliation":"US Forest Service","affiliationROR":"https://ror.org/03zmjc935","affiliations":[{"organization":"US Forest Service","identifier":"https://ror.org/03zmjc935"}],"order":4},{"firstName":"Christopher","lastName":"Keefe","email":"","affiliation":"Bureau of Land Management","affiliationROR":"https://ror.org/01sy5zn44","affiliations":[{"organization":"Bureau of Land Management","identifier":"https://ror.org/01sy5zn44"}],"order":5},{"firstName":"Heather","lastName":"Abernathy","email":"","affiliation":"Colorado State University","affiliationROR":"https://ror.org/03k1gpj17","affiliations":[{"organization":"Colorado State University","identifier":"https://ror.org/03k1gpj17"}],"order":6},{"firstName":"Robert","lastName":"Sparks","email":"rob.sparks@birdconservancy.org","affiliation":"Bird Conservancy of the Rockies","affiliations":[{"organization":"Bird Conservancy of the Rockies"},{"organization":"Bird Conservancy of the Rockies","identifier":"https://ror.org/027kj5136"},{"organization":"Bird Conservancy of the Rockies","identifier":"https://ror.org/027kj5136"}],"order":7},{"firstName":"Mark","lastName":"Ditmer","email":"","affiliation":"Rocky Mountain Research Station","affiliationROR":"https://ror.org/04347cr60","affiliations":[{"organization":"Rocky Mountain Research Station","identifier":"https://ror.org/04347cr60"}],"order":8}],"abstract":"\u003cp\u003eThis data repository accompanies a manuscript undergoing peer review. The abstract for the manuscript is as follows:\u003c/p\u003e\n\u003cp\u003eLand managers face increasing pressure to balance demands for recreation with resource stewardship, including wildlife conservation. Negative recreation impacts on wildlife are well documented, but limited knowledge of underlying mechanisms hinders informed management. We used a hierarchical community abundance model to analyze 2021–2023 breeding bird data from the Integrated Monitoring in Bird Conservation Regions program to evaluate recreation impacts on public lands in Colorado. We related avian diversity to recreation infrastructure (trails and roads) and regulation (OHV restriction). We also leveraged anonymized GPS-enabled smartphone data to estimate relationships with human traffic (intensity and speed), and then applied path analysis to quantify how much relationships with traffic explained relationships with infrastructure and regulation. Shannon diversity of species in our study area (\u003cem\u003eN\u003c/em\u003e = 150) declined by 44% as trail density increased from 0 to 8 km per km\u003csup\u003e2\u003c/sup\u003e. Diversity for habitat and dietary specialists, migratory species, small-bodied species, insectivores, ground-associated species, and Colorado SGCN (species designated by the state as being of greatest conservation need) declined, whereas diversity for species commensal with humans increased with increasing trail density. Human traffic intensity was a supported mechanistic factor explaining 30–77% of trail-density relationships for all these groups except habitat specialists. Diversity also increased with prohibition of off-highway vehicles on trails, but human traffic contributed little to explaining this relationship. Our results suggest limiting non-motorized human traffic during the breeding season could alleviate some but not all negative recreation impacts on birds. Limiting both infrastructure and motorized traffic therefore remain necessary tools for conserving biodiversity.\u003c/p\u003e\n","funders":[{"organization":"Colorado Parks and Wildlife","identifierType":"ror","identifier":"https://ror.org/032xegc37","awardNumber":"","awardDescription":"","order":0}],"keywords":["anthropogenic disturbance","Biodiversity","Conservation science","Birds","Community ecology","ecological mechanisms","human land use","Land management","path analysis"],"fieldOfScience":"Natural sciences","relatedWorks":[{"relationship":"article","identifierType":"DOI","identifier":"https://doi.org/10.5281/zenodo.23419954"}],"versionNumber":7,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.0rxwdbscz","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.cnp5hqcng"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.cnp5hqcng/versions"},"stash:version":{"href":"/api/v2/versions/471086"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.cnp5hqcng/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.cnp5hqcng","id":195624,"storageSize":1839234,"relatedPublicationISSN":"2046-2069","title":"Data from: New depsidones from \u003cem\u003eGarcinia parvifolia\u003c/em\u003e and their antidiabetic, anti-tyrosinase, and antioxidant activities","authors":[{"firstName":"Rico","lastName":"Ramadhan","email":"rico.ramadhan@fst.unair.ac.id","affiliation":"Universitas Airlangga","affiliationROR":"https://ror.org/04ctejd88","affiliations":[{"organization":"Universitas Airlangga","identifier":"https://ror.org/04ctejd88"}],"orcid":"0000-0002-2565-7944","roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"},{"role":"Writing – original draft","identifier":"https://credit.niso.org/contributor-roles/writing-original-draft"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Azeana","lastName":"Zahari","email":"azeanazahari@um.edu.my","affiliation":"University of Malaya","affiliationROR":"https://ror.org/00rzspn62","affiliations":[{"organization":"University of Malaya","identifier":"https://ror.org/00rzspn62"}],"order":1,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Supervision","identifier":"https://credit.niso.org/contributor-roles/supervision"},{"role":"Writing – review \u0026 editing","identifier":"https://credit.niso.org/contributor-roles/writing-review-editing"}]},{"firstName":"Irmayanti","lastName":"Tri Kurnia","email":"irmakurnia911@gmail.com","affiliation":"Universitas Airlangga","affiliationROR":"https://ror.org/04ctejd88","affiliations":[{"organization":"Universitas Airlangga","identifier":"https://ror.org/04ctejd88"}],"order":2,"roles":[{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Anh-Khoa","lastName":"Nguyen","affiliation":"Ton Duc Thang University","affiliationROR":"https://ror.org/01drq0835","affiliations":[{"organization":"Ton Duc Thang University","identifier":"https://ror.org/01drq0835"}],"orcid":"0009-0009-6026-444X","order":3,"roles":[{"role":"Data 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University","identifier":"https://ror.org/028wp3y58"}],"order":6,"roles":[{"role":"Software","identifier":"https://credit.niso.org/contributor-roles/software"},{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"}]},{"firstName":"Preecha","lastName":"Phuwapraisirisan","email":"Preecha.P@chula.ac.th","affiliation":"Chulalongkorn University","affiliationROR":"https://ror.org/028wp3y58","affiliations":[{"organization":"Chulalongkorn University","identifier":"https://ror.org/028wp3y58"}],"order":7,"roles":[{"role":"Conceptualization","identifier":"https://credit.niso.org/contributor-roles/conceptualization"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Dinda","lastName":"Ayu Lestari","email":"dindaayulestari@staf.unair.ac.id","affiliation":"Universitas Airlangga","affiliationROR":"https://ror.org/04ctejd88","affiliations":[{"organization":"Universitas Airlangga","identifier":"https://ror.org/04ctejd88"}],"order":8,"roles":[{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Jirapast","lastName":"Sichaem","email":"jirapast@tu.ac.th","affiliation":"Thammasat University","affiliationROR":"https://ror.org/002yp7f20","affiliations":[{"organization":"Thammasat University","identifier":"https://ror.org/002yp7f20"}],"order":9,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"},{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Kautsar","lastName":"Ul-Haq","email":"kautsar.ul.haq@fst.unair.ac.id","affiliation":"Universitas Airlangga","affiliationROR":"https://ror.org/04ctejd88","affiliations":[{"organization":"Universitas Airlangga","identifier":"https://ror.org/04ctejd88"}],"order":10,"roles":[{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"},{"role":"Methodology","identifier":"https://credit.niso.org/contributor-roles/methodology"}]},{"firstName":"Aziz","lastName":"Ahmad Bukhori","email":"azizahmad1290@gmail.com","affiliation":"Universitas Airlangga","affiliationROR":"https://ror.org/04ctejd88","affiliations":[{"organization":"Universitas Airlangga","identifier":"https://ror.org/04ctejd88"}],"order":11,"roles":[{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"}]},{"firstName":"Devi","lastName":"Nawang Ariningtyas","email":"devi.nawang.ariningtyas-2024@fst.unair.ac.id","affiliation":"Universitas Airlangga","affiliationROR":"https://ror.org/04ctejd88","affiliations":[{"organization":"Universitas Airlangga","identifier":"https://ror.org/04ctejd88"}],"order":12,"roles":[{"role":"Investigation","identifier":"https://credit.niso.org/contributor-roles/investigation"}]},{"firstName":"Lukman","lastName":"Riyadi","email":"lukman280684@gmail.com","affiliation":"Environmental Office of Balikpapan","affiliations":[{"organization":"Environmental Office of Balikpapan"}],"order":13,"roles":[{"role":"Data curation","identifier":"https://credit.niso.org/contributor-roles/data-curation"}]}],"abstract":"\u003cp\u003eIn the search for potent bioactive compounds derived from medicinal plants, \u003cem\u003eGarcinia parvifolia\u003c/em\u003e from East Kalimantan has demonstrated significant bioactivity consistent with established scientific criteria. Bioassay-guided isolation of the fruit extract resulted in two new depsidones named methyl garcidepsidone B (\u003cstrong\u003e1\u003c/strong\u003e) and parvifoliricodone A (\u003cstrong\u003e6\u003c/strong\u003e), two known analogues, a phloroglucinol, and a furfural derivative. Their structures were determined by spectroscopic techniques. The isolated compounds were subjected to assessments for their potential antidiabetic effects through an α-glucosidase inhibition assay, anti-tyrosinase activity, and antioxidant properties. Out of the isolated compounds, methyl garcidepsidone B (\u003cstrong\u003e1\u003c/strong\u003e) was the most potent inhibitor against α-glucosidase compared with acarbose as a positive standard. In the antioxidant assay, all isolated compounds showed significant free radical scavenging activity against ABTS, with the exception of compound \u003cstrong\u003e4\u003c/strong\u003e. Regarding tyrosinase inhibitory activity, all isolated compounds exhibited low enzyme inhibition activity. Additionally, \u003cem\u003ein silico\u003c/em\u003e molecular docking studies showed that compounds \u003cstrong\u003e1\u003c/strong\u003e-\u003cstrong\u003e3\u003c/strong\u003e exhibited favorable conformation and binding affinities within the enzymatic pockets of α-glucosidase. These findings indicate that the indigenous \u003cem\u003eG. parvifolia\u003c/em\u003e fruit may serve as a natural source of antidiabetic, antioxidant, and anti-tyrosinase compounds, with potential for further pharmacological investigation.\u003c/p\u003e\n","funders":[{"organization":"Universitas Airlangga","identifierType":"ror","identifier":"https://ror.org/04ctejd88","awardNumber":"173/UN3.LPPM/PT.01.03/2024","awardDescription":"","awardTitle":"International Research Consortium","order":0}],"keywords":["Natural products","Garcinia parvifolia","Depsidone"],"fieldOfScience":"Chemical sciences","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1039/d6ra06497c"}],"versionNumber":7,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.cnp5hqcng","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.cnp5hqckq"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.cnp5hqckq/versions"},"stash:version":{"href":"/api/v2/versions/470964"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.cnp5hqckq/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.cnp5hqckq","id":181368,"storageSize":2025109688,"relatedPublicationISSN":"0304-3800","title":"Time-resolved and time-averaged environmental predictors with plankton community outputs from SINMOD (Mid-Norwegian Shelf, 2019)","authors":[{"firstName":"Harold","lastName":"Horsley","email":"harold.horsley@ntnu.no","affiliation":"Norwegian University of Science and Technology","affiliationROR":"https://ror.org/05xg72x27","affiliations":[{"organization":"Norwegian University of Science and Technology","identifier":"https://ror.org/05xg72x27"}],"orcid":"0009-0005-0361-7609"},{"firstName":"Morten Omholt","lastName":"Alver","email":"morten.alver@ntnu.no","affiliation":"Norwegian University of Science and Technology","affiliationROR":"https://ror.org/05xg72x27","affiliations":[{"organization":"Norwegian University of Science and Technology","identifier":"https://ror.org/05xg72x27"}],"order":1},{"firstName":"Ingrid","lastName":"Ellingsen","email":"ingrid.ellingsen@sintef.no","affiliation":"SINTEF Ocean","affiliationROR":"https://ror.org/004wre089","affiliations":[{"organization":"SINTEF Ocean","identifier":"https://ror.org/004wre089"}],"order":2}],"abstract":"\u003cp\u003eThis dataset contains outputs from the SINMOD coupled physical–biogeochemical ocean model (SINTEF Ocean), used to examine how the temporal alignment of environmental predictors with community observations affects predictive skill when modelling marine plankton beta diversity. It is provided to support reproduction of the analyses and reuse in related modelling studies. The data cover the mid-Norwegian shelf (60°00'–67°58' N, 5°01'–7°34' E) at a horizontal resolution of 800 m × 800 m (555 × 950 grid cells, ~272,000 km² of coastal and adjacent offshore waters) across all 365 days of 2019. Three CF-1.5 compliant NetCDF files are provided. The first (predictor_time_resolved.nc) contains daily surface-layer (0–3 m) temperature and salinity fields used as time-resolved environmental predictors. The second (predictor_time_averaged.nc) contains annual-mean surface-layer fields for seven variables — temperature, salinity, vorticity, silicate, ammonium, dissolved organic carbon (DOC), and nitrate — used as temporally aggregated predictors. The third (response_plankton.nc) contains daily surface-layer biomass of five plankton functional groups — diatoms, flagellates, ciliates, heterotrophic nanoflagellates (HNANO), and bacteria — from which pairwise Bray–Curtis dissimilarities were computed as the response variable in the associated study. All files share a common geographic coordinate grid. The data span strong seasonal and spatial gradients in physical forcing and community composition, including spring and late-summer bloom periods, and are suited for reuse in marine beta-diversity modelling, species distribution modelling, spatiotemporal statistical methods development, and oceanographic studies of the Norwegian shelf. The data are entirely derived from the SINMOD model and contain no observations involving human subjects; no ethical restrictions apply.\u003c/p\u003e\n","keywords":["Oceans","Plankton","Oceanography"],"fieldOfScience":"Earth and related environmental sciences","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1016/j.ecolmodel.2026.111779"},{"relationship":"software","identifierType":"DOI","identifier":"https://doi.org/10.5281/zenodo.23568887"},{"relationship":"software","identifierType":"URL","identifier":"https://github.com/butterman0/bayesian-hierarchical-beta-diversity-modelling"}],"versionNumber":8,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.cnp5hqckq","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.905qfttn4"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.905qfttn4/versions"},"stash:version":{"href":"/api/v2/versions/471096"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.905qfttn4/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.905qfttn4","id":83938,"storageSize":1168761560,"relatedPublicationISSN":"2095-5138","title":"Genome assemblies of \u003cem\u003eKallima alicia\u003c/em\u003e and \u003cem\u003eKallima incognita\u003c/em\u003e","authors":[{"firstName":"Shuting","lastName":"Wang","email":"wstree@pku.edu.cn","affiliation":"Peking University","affiliationROR":"https://ror.org/02v51f717","affiliations":[{"organization":"Peking University","identifier":"https://ror.org/02v51f717"}],"orcid":"0000-0003-1049-5249"}],"abstract":"\u003cp\u003eHybridization may have multiple impacts on speciation and adaptation. Yet the evidence of adaptive introgression events that have historically occurred between nonradiating or established species is still lacking. The oakleaf butterflies in the genus \u003cem\u003eKallima\u003c/em\u003e include multiple sympatric and incipient species with a known history of diversification and therefore serve as a useful system for addressing historical introgression and adaptation. By integrating population genomics, phylogenomics, CRISPR/Cas9 genome editing and de novo genome assembly, we disentangled the genome-wide pattern of admixture among multiple \u003cem\u003eKallima\u003c/em\u003e species and used the putative introgressed gene \u003cem\u003epale\u003c/em\u003e as an example to reveal its role in scale pigmentation, structure and potentially in sexual dimorphism. We further demonstrated the complex evolutionary history of the Z chromosome largely owing to historical introgression. Our study revealed genome-wide introgression that has historically occurred during butterfly dispersal and differentiation, facilitating the understanding of interspecific relationships and potential local adaptation during gradual evolution.\u003c/p\u003e\n\u003cp\u003eThis dataset contains genome assemblies and annotation files of \u003cem\u003eKallima paralekta\u003c/em\u003e and \u003cem\u003eKallima alicia\u003c/em\u003e.\u003c/p\u003e\n","funders":[{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"","awardDescription":"","awardTitle":"","order":0}],"keywords":["butterfly","Genome","Genome annotation"],"fieldOfScience":"Biological sciences","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1093/nsr/nwag617"}],"versionNumber":5,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-10-23","lastModificationDate":"2026-10-23","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.905qfttn4","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}}]}}