{"_links":{"self":{"href":"/api/v2/search"},"first":{"href":"/api/v2/search"},"last":{"href":"/api/v2/search?page=3596"},"next":{"href":"/api/v2/search?page=2"}},"count":20,"total":71919,"_embedded":{"stash:datasets":[{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.k0p2ngfns"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.k0p2ngfns/versions"},"stash:version":{"href":"/api/v2/versions/458242"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.k0p2ngfns/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.k0p2ngfns","id":178632,"storageSize":1342975,"relatedPublicationISSN":"2371-1671","title":"Data from: Canada's species at risk act: Listing lags and limbos","authors":[{"firstName":"Peter","lastName":"Thompson","email":"peter_thompson@sfu.ca","affiliation":"Simon Fraser University","affiliationROR":"https://ror.org/0213rcc28","affiliations":[{"name":"Simon Fraser University","ror_id":"https://ror.org/0213rcc28"}],"orcid":"0000-0002-7590-8473"}],"abstract":"\u003cp\u003eCanada's Species at Risk Act (SARA) aims to prevent wildlife extinction and facilitate the recovery and management of species imperiled due to human activity. A species may only be included on SARA after scientific assessment and a Cabinet decision. Recommended timelines for each stage of this process were introduced in 2017. We evaluated the influence of these recommendations by comparing the frequency and severity of delays before and after 2017, focusing specifically on the second stage where timelines are not mandatory. We also analyzed stated causes of delay for each species considered for listing. We found that decisions were made within the timeframe for only 17 of 288 species, and 90 were listed after delays. Critically, 153 of 181 species waiting for a decision have already exceeded recommended timelines. Timeline compliance did not improve after the 2017 policy was introduced (longer median decision times and proportionally fewer species advanced to decision), where decisions exceeded the timelines by an average of 446 days. Certain species groups, particularly marine vertebrates, experienced disproportionate delays, but publicly available information highlighting causes of delays is limited. Despite the intention of the 2017 policy to expedite decision-making, species at risk in Canada continue to wait.\u003c/p\u003e\n","funders":[{"organization":"Liber Ero Foundation","identifierType":"ror","identifier":"https://ror.org/05jgspg84","awardNumber":"","awardDescription":"","awardTitle":"Liber Ero Postdoctoral Fellowship","order":0}],"keywords":["Species at Risk Act","Endangered species","Biodiversity conservation","conservation law"],"fieldOfScience":"Natural sciences","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1139/facets-2026-0031"}],"versionNumber":2,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-17","lastModificationDate":"2026-08-17","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.k0p2ngfns","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.s4mw6m9nb"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.s4mw6m9nb/versions"},"stash:version":{"href":"/api/v2/versions/458252"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.s4mw6m9nb/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.s4mw6m9nb","id":186547,"storageSize":68667202,"relatedPublicationISSN":"1365-2052","title":"SNP and microsatellite genotype data for the characterization of the Lipizzan horse population from Lipica Stud","authors":[{"firstName":"Minja","lastName":"Zorc","email":"minja.zorc@bf.uni-lj.si","affiliation":"University of Ljubljana","affiliationROR":"https://ror.org/05njb9z20","affiliations":[{"name":"University of Ljubljana","ror_id":"https://ror.org/05njb9z20"}],"orcid":"0000-0003-3330-7909"},{"firstName":"Peter","lastName":"Dovc","email":"peter.dovc@bf.uni-lj.si","affiliation":"University of Ljubljana","affiliationROR":"https://ror.org/05njb9z20","affiliations":[{"name":"University of Ljubljana","ror_id":"https://ror.org/05njb9z20"}],"orcid":"0000-0002-7418-0054","order":1}],"abstract":"\u003cp\u003eThis dataset contains SNP and microsatellite (STR) genotype data generated for 233 Lipizzan horses from Lipica Stud, Slovenia. The data were used to assess genetic diversity, genomic inbreeding, population structure, and signatures of selection in the Lipizzan horse population. The repository includes genotype datasets and accompanying metadata required to reproduce the molecular analyses presented in the associated manuscript. Detailed file descriptions and data formats are provided in the accompanying README file.\u003c/p\u003e\n","funders":[{"organization":"The Slovenian Research and Innovation Agency","identifierType":"ror","identifier":"https://ror.org/059bp8k51","awardNumber":"P4-0220","awardDescription":"","awardTitle":"","order":0}],"keywords":["Lipizzan horse","SNP array","Microsatellites","pedigree","Genomics","selection signature"],"fieldOfScience":"Animal and dairy science","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1002/age.70182"}],"versionNumber":4,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"metadata_changed","publicationDate":"2026-08-17","lastModificationDate":"2026-08-17","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.s4mw6m9nb","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.d2547d8jj"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.d2547d8jj/versions"},"stash:version":{"href":"/api/v2/versions/458255"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.d2547d8jj/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.d2547d8jj","id":190933,"storageSize":278354,"relatedPublicationISSN":"0021-8790","title":"Data and code from: Weathering the storm: Most maternal and environmental drivers of individual reproductive success do not scale up to population recruitment in a large herbivore","authors":[{"firstName":"Rachel","lastName":"Bergeron","email":"rachel.bergeron@usherbrooke.ca","affiliation":"Université de Sherbrooke","affiliationROR":"https://ror.org/00kybxq39","affiliations":[{"name":"Université de Sherbrooke","ror_id":"https://ror.org/00kybxq39"}],"orcid":"0000-0003-4946-5776"},{"firstName":"Richard","lastName":"Duncan","email":"","affiliation":"University of Canberra","affiliationROR":"https://ror.org/04s1nv328","affiliations":[{"name":"University of Canberra","ror_id":"https://ror.org/04s1nv328"}]},{"firstName":"David","lastName":"Forsyth","email":"","affiliation":"NSW Department of Primary Industries and Regional Development","affiliationROR":"https://ror.org/04gzvat73","affiliations":[{"name":"NSW Department of Primary Industries and Regional Development","ror_id":"https://ror.org/04gzvat73"}]},{"firstName":"Wendy","lastName":"King","email":"","affiliation":"Australian National University","affiliationROR":"https://ror.org/019wvm592","affiliations":[{"name":"Université de Sherbrooke","ror_id":"https://ror.org/00kybxq39"},{"name":"Australian National University","ror_id":"https://ror.org/019wvm592"}]},{"firstName":"Marco","lastName":"Festa-Bianchet","email":"","affiliation":"Australian National University","affiliationROR":"https://ror.org/019wvm592","affiliations":[{"name":"Université de Sherbrooke","ror_id":"https://ror.org/00kybxq39"},{"name":"Australian National University","ror_id":"https://ror.org/019wvm592"}]}],"abstract":"\u003cp\u003ePopulation growth depends upon individual survival and reproduction, but do drivers of individual reproductive success scale up to population recruitment? Factors affecting individuals may have little effect on population dynamics if individuals within a population experience different conditions. When seasonal resource availability is unpredictable and the breeding season is long, average conditions over a breeding cycle may poorly reflect the environment experienced by many individuals. We compared the drivers of individual reproductive success and population recruitment in an asynchronously breeding large herbivore, the eastern grey kangaroo (\u003cem\u003eMacropus giganteus\u003c/em\u003e). We analysed 18 years of individual-based data using multivariate hierarchical Bayesian models to first identify the causal mechanisms relating population density, environmental conditions, and maternal traits to individual success. We then assessed whether the drivers of individual reproductive success scaled up to determine population recruitment. Most maternal and environmental covariates strongly influenced individual reproductive success, with distinct effects on juvenile survival before and after pouch exit. Maternal traits had a greater influence in the pouch, whereas environmental conditions became increasingly important once young exited the pouch. Most drivers of individual reproductive success did not affect population recruitment. Recruitment increased with population density and mean body condition of adult females. Weather harshness had a weak positive effect on recruitment, which appeared independent of female age structure, previous recruitment, or forage. Most drivers of individual reproductive success did not scale up to population recruitment. Birth asynchrony could buffer population recruitment against environmental variation such that variables affecting individual reproduction have little impact at the population level. Large herbivores that reproduce asynchronously may therefore be more resilient to environmental variability than synchronous breeders.\u003c/p\u003e\n","funders":[{"organization":"Natural Sciences and Engineering Research Council of Canada","identifierType":"ror","identifier":"https://ror.org/01h531d29","awardNumber":"","awardDescription":"","awardTitle":"","order":0},{"organization":"Mitacs","identifierType":"ror","identifier":"https://ror.org/00cjrc276","awardNumber":"","awardDescription":"","awardTitle":"","order":1},{"organization":"Holsworth Wildlife Research Endowment","identifierType":"ror","identifier":"","awardNumber":"","awardDescription":"","awardTitle":"","order":2}],"keywords":["Bayesian modelling","eastern grey kangaroo","Environmental variability","Long-term research","Population density","recruitment","Reproductive success","maternal traits"],"fieldOfScience":"Biological sciences","versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-17","lastModificationDate":"2026-08-17","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.d2547d8jj","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.5x69p8dmc"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.5x69p8dmc/versions"},"stash:version":{"href":"/api/v2/versions/457922"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.5x69p8dmc/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.5x69p8dmc","id":190755,"storageSize":10349937,"relatedPublicationISSN":"2468-2659","title":"Data from: From monotypic to multispecies: Integrative data redefine \u003cem\u003eRheum nobile\u003c/em\u003e complex (Polygonaceae) in Sky Island-Alpine habitats","authors":[{"firstName":"Zhuo","lastName":"Zhou","email":"zhouzhuo@mail.kib.ac.cn","affiliation":"Kunming Institute of Botany","affiliationROR":"https://ror.org/02e5hx313","affiliations":[{"name":"Kunming Institute of Botany","ror_id":"https://ror.org/02e5hx313"}],"orcid":"0000-0001-9682-5717"},{"firstName":"Boyang","lastName":"Geng","email":"","affiliation":"Kunming Institute of Botany","affiliationROR":"https://ror.org/02e5hx313","affiliations":[{"name":"Kunming Institute of Botany","ror_id":"https://ror.org/02e5hx313"}]},{"firstName":"Minshu","lastName":"Song","email":"","affiliation":"Kunming Institute of Botany","affiliationROR":"https://ror.org/02e5hx313","affiliations":[{"name":"Kunming Institute of Botany","ror_id":"https://ror.org/02e5hx313"}]},{"firstName":"Tao","lastName":"Feng","email":"","affiliation":"University of Cambridge","affiliationROR":"https://ror.org/013meh722","affiliations":[{"name":"University of Cambridge","ror_id":"https://ror.org/013meh722"}]},{"firstName":"Lu","lastName":"Sun","email":"","affiliation":"Kunming Institute of Botany","affiliationROR":"https://ror.org/02e5hx313","affiliations":[{"name":"Kunming Institute of Botany","ror_id":"https://ror.org/02e5hx313"}],"orcid":"0000-0002-7688-6472"},{"firstName":"Bin","lastName":"Wang","email":"","affiliation":"Gaoligong Mountain National Nature Reserve","affiliations":[{"name":"Gaoligong Mountain National Nature Reserve"}]},{"firstName":"Hang","lastName":"Sun","email":"","affiliation":"Kunming Institute of Botany","affiliationROR":"https://ror.org/02e5hx313","affiliations":[{"name":"Kunming Institute of Botany","ror_id":"https://ror.org/02e5hx313"}],"orcid":"0000-0001-5127-4579"},{"firstName":"Bo","lastName":"Song","email":"","affiliation":"Kunming Institute of Botany","affiliationROR":"https://ror.org/02e5hx313","affiliations":[{"name":"Kunming Institute of Botany","ror_id":"https://ror.org/02e5hx313"}]}],"abstract":"\u003cp\u003eThis dataset provides multi-locus molecular sequence alignments for species delimitation and phylogenetic analysis of \u003cem\u003eRheum nobile\u003c/em\u003e (Polygonaceae), a glasshouse plant endemic to the subnival flora of the Himalaya-Hengduan Mountains. The dataset comprises DNA sequence alignments from three genomic compartments: the nuclear genome, the plastid genome, and the nuclear ribosomal internal transcribed spacer (ITS) region. Specifically, the dataset includes: (1) individual alignments of 89 single-copy nuclear genes (89_single_copy_nuclear_genes.zip); (2) a concatenated alignment matrix of these 89 single-copy nuclear genes (Concatenated_alignment_matrix_of_89_single-copy_genes.phy); (3) an alignment matrix of the complete plastid genome (Alignment_matrix_of_complete_plastid_genome.phy); (4) a concatenated alignment matrix of plastid protein-coding (CDS) genes (Concatenated_alignment_matrix_of_plastid_CDS_genes.phy); (5) an alignment matrix of the nuclear ribosomal ITS region (Alignment_matrix_of_nuclear_ribosomal_ITS.phy); and (6) a sample–taxon correspondence table linking voucher specimens to sampled taxa (Table_of_sample–taxon_correspondence.csv). Sequence data were generated from extensive sampling across the distribution of \u003cem\u003eR. nobile\u003c/em\u003e, covering the Central Himalayas, Eastern Himalayas, Hengduan Mountains, and Gaoligong Mountains. All alignments are provided in PHYLIP format and the correspondence table in CSV format. The 89 single-copy nuclear genes are deposited in Dryad rather than GenBank because precise annotation information for these loci could not be obtained, precluding compliance with GenBank annotation requirements. The dataset supports integrative taxonomic analyses, including multi-locus phylogenetic reconstruction from nuclear and plastid genomes, Bayesian coalescent-based species delimitation (BPP), and investigations of cytonuclear discordance likely driven by gene flow. Beyond the associated study, these data have broad reuse potential for comparative phylogenomic analyses across Polygonaceae and related families, studies of hybridization and introgression in alpine plant systems, methodological comparisons of concatenated versus coalescent-based phylogenomic approaches, and investigations of nuclear–plastid genomic discordance. There are no legal or ethical restrictions on data reuse; the dataset is released under the Creative Commons Zero (CC0) public domain dedication.\u003c/p\u003e\n","funders":[{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"U23A20149","awardDescription":"","awardTitle":""},{"organization":"National Natural Science Foundation of China","identifierType":"ror","identifier":"https://ror.org/01h0zpd94","awardNumber":"32371702","awardDescription":"","awardTitle":""},{"organization":"Chinese Academy of Sciences","identifierType":"ror","identifier":"https://ror.org/034t30j35","awardNumber":"CAS-TAX-24-061","awardDescription":"","awardTitle":""},{"organization":"Chinese Academy of Sciences","identifierType":"ror","identifier":"https://ror.org/034t30j35","awardNumber":"xbzg-zdsys-202319","awardDescription":"","awardTitle":""},{"organization":"Ministry of Science and Technology of the People's Republic of China","identifierType":"ror","identifier":"https://ror.org/027s68j25","awardNumber":"2024QZKK0200","awardDescription":"","awardTitle":""}],"keywords":["Rheum nobile","sky-land","Speciation"],"fieldOfScience":"Biological sciences","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1016/j.pld.2026.05.002"}],"versionNumber":5,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.5x69p8dmc","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wh70rxx4h"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wh70rxx4h/versions"},"stash:version":{"href":"/api/v2/versions/457940"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wh70rxx4h/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.wh70rxx4h","id":190859,"storageSize":1379235,"relatedPublicationISSN":"2051-1434","title":"Data from: Exposure to artificial light at night accelerates seasonal reproductive development and nocturnal activity but not migratory departure in a North American songbird","authors":[{"firstName":"Sarah","lastName":"Wanamaker","email":"","affiliation":"Indiana University","affiliationROR":"https://ror.org/01kg8sb98","affiliations":[{"name":"Indiana University","ror_id":"https://ror.org/01kg8sb98"}],"order":0},{"firstName":"Samantha","lastName":"Diedrich","email":"","affiliation":"Indiana University","affiliationROR":"https://ror.org/01kg8sb98","affiliations":[{"name":"Indiana University","ror_id":"https://ror.org/01kg8sb98"}],"order":1},{"firstName":"Alex","lastName":"Jahn","email":"","affiliation":"Oregon State University","affiliationROR":"https://ror.org/00ysfqy60","affiliations":[{"name":"Oregon State University","ror_id":"https://ror.org/00ysfqy60"}],"order":2},{"firstName":"Katie","lastName":"Talbott","email":"","affiliation":"University of Memphis","affiliationROR":"https://ror.org/01cq23130","affiliations":[{"name":"University of Memphis","ror_id":"https://ror.org/01cq23130"}],"order":3},{"firstName":"Victor","lastName":"Cueto","email":"","affiliation":"National University of Patagonia San Juan Bosco","affiliationROR":"https://ror.org/022g6pv04","affiliations":[{"name":"National University of Patagonia San Juan Bosco","ror_id":"https://ror.org/022g6pv04"}],"order":4},{"firstName":"Tara","lastName":"Smiley","email":"","affiliation":"Stony Brook University","affiliationROR":"https://ror.org/05qghxh33","affiliations":[{"name":"Stony Brook University","ror_id":"https://ror.org/05qghxh33"}],"order":5},{"firstName":"Daniel","lastName":"Becker","email":"Danbeck@ou.edu","affiliation":"University of Oklahoma","affiliationROR":"https://ror.org/02aqsxs83","affiliations":[{"name":"University of Oklahoma","ror_id":"https://ror.org/02aqsxs83"}],"orcid":"0000-0003-4315-8628","order":6},{"firstName":"Ellen","lastName":"Ketterson","email":"","affiliation":"Indiana University","affiliationROR":"https://ror.org/01kg8sb98","affiliations":[{"name":"Indiana University","ror_id":"https://ror.org/01kg8sb98"}],"order":7}],"abstract":"\u003cp\u003eLife evolved under dark nights but is now exposed to artificial light at night (ALAN). Many temperate zone organisms, including birds, rely on photoperiod as a primary cue to initiate migration and reproduction in response to lengthening days in spring; ALAN may disrupt seasonal timing by mimicking longer day lengths. If birds interpret ALAN as longer days, then ALAN exposure may accelerate the seasonal timing of migration and reproduction. We exposed captive dark-eyed juncos (\u003cem\u003eJunco hyemalis\u003c/em\u003e), a nocturnal migrant that breeds in boreal forests and winters in the eastern US, to either ALAN (1.7 lux) or dark nights during gradually increasing daylengths in spring. We predicted that if ALAN is interpreted as longer days, then ALAN-exposed birds would fatten, exhibit nocturnal migratory restlessness (Zugunruhe), and elevate testosterone sooner than controls as daylength increased. We also predicted nighttime suppression of melatonin by ALAN. Because some of these variables are known to co-vary with distance migrated indicated by stable isotope composition of feathers, we anticipated a modulatory role of migratory distance on timing. In addition, we predicted that when returned to the wild, the ALAN-exposed birds would migrate sooner. Consistent with predictions, we found earlier seasonal expression of Zugunruhe in ALAN-exposed males and females and earlier elevation of testosterone levels in ALAN-exposed males. We did not find suppressed melatonin in ALAN-exposed females. We also did not find that ALAN accelerated migratory departure, nor was departure date predicted by fat deposition, sex, or migratory distance. Rather, all birds departed around the same date, and the key determinant of departure date was weather. We discuss whether the lack of effect of ALAN on departure was a consequence of return to natural day lengths after release, thus ending exposure to ALAN. Because spring weather is highly variable from year to year, ALAN may play a role in departure timing under different weather patterns.\u003c/p\u003e\n","funders":[{"organization":"Indiana University","identifierType":"ror","identifier":"https://ror.org/01kg8sb98","awardNumber":"","awardDescription":"","awardTitle":"","order":0}],"keywords":["Animal migration","Sexual reproduction","Ornithology","Urbanization"],"fieldOfScience":"Biological sciences","versionNumber":2,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.wh70rxx4h","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.8gtht774f"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.8gtht774f/versions"},"stash:version":{"href":"/api/v2/versions/457934"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.8gtht774f/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.8gtht774f","id":187393,"storageSize":594124,"relatedPublicationISSN":"2375-2548","title":"Data from: The CENP-A chaperone complex spatially organizes centromeres","authors":[{"firstName":"Hindol","lastName":"Gupta","email":"hindol.gupta@nih.gov","affiliation":"National Cancer Institute","affiliationROR":"https://ror.org/040gcmg81","affiliations":[{"name":"National Cancer Institute","ror_id":"https://ror.org/040gcmg81"}],"order":0},{"firstName":"Julian","lastName":"Haase","email":"julian.haase@nih.gov","affiliation":"National Cancer Institute","affiliationROR":"https://ror.org/040gcmg81","affiliations":[{"name":"National Cancer Institute","ror_id":"https://ror.org/040gcmg81"}],"order":1},{"firstName":"Yicong","lastName":"Wu","email":"yicong.wu@nih.gov","affiliation":"National Institute of Biomedical Imaging and Bioengineering","affiliationROR":"https://ror.org/00372qc85","affiliations":[{"name":"National Institute of Biomedical Imaging and Bioengineering","ror_id":"https://ror.org/00372qc85"}],"orcid":"0000-0002-8819-7527","order":2},{"firstName":"Jiji","lastName":"Chen","email":"jiji.chen@nih.gov","affiliation":"National Institute of Biomedical Imaging and Bioengineering","affiliationROR":"https://ror.org/00372qc85","affiliations":[{"name":"National Institute of Biomedical Imaging and Bioengineering","ror_id":"https://ror.org/00372qc85"}],"orcid":"0000-0002-4426-3035","order":3},{"firstName":"Warif","lastName":"El Yakoubi","email":"warif.elyakoubi@nih.gov","affiliation":"National Heart, Lung, and Blood Institute Division of Intramural Research","affiliationROR":"https://ror.org/023ny1p48","affiliations":[{"name":"National Heart, Lung, and Blood Institute Division of Intramural Research","ror_id":"https://ror.org/023ny1p48"}],"order":4},{"firstName":"George","lastName":"Karadimov","email":"george.karadimov@nih.gov","affiliation":"National Cancer Institute","affiliationROR":"https://ror.org/040gcmg81","affiliations":[{"name":"National Cancer Institute","ror_id":"https://ror.org/040gcmg81"}],"orcid":"0009-0006-4095-0141","order":5},{"firstName":"Ana","lastName":"Losada","email":"alosada@cnio.es","affiliation":"Spanish National Cancer Research Centre","affiliationROR":"https://ror.org/00bvhmc43","affiliations":[{"name":"Spanish National Cancer Research Centre","ror_id":"https://ror.org/00bvhmc43"}],"order":6},{"firstName":"Takashi","lastName":"Akera","email":"takashi.akera@nih.gov","affiliation":"National Heart, Lung, and Blood Institute Division of Intramural Research","affiliationROR":"https://ror.org/023ny1p48","affiliations":[{"name":"National Heart, Lung, and Blood Institute Division of Intramural Research","ror_id":"https://ror.org/023ny1p48"}],"order":7},{"firstName":"Hari","lastName":"Shroff","email":"shroffh@janelia.hhmi.org","affiliation":"Janelia Research Campus","affiliationROR":"https://ror.org/013sk6x84","affiliations":[{"name":"Janelia Research Campus","ror_id":"https://ror.org/013sk6x84"}],"orcid":"0000-0003-3613-8215","order":8},{"firstName":"Alexander","lastName":"Kelly","email":"alexander.kelly@nih.gov","affiliation":"National Cancer Institute","affiliationROR":"https://ror.org/040gcmg81","affiliations":[{"name":"National Cancer Institute","ror_id":"https://ror.org/040gcmg81"}],"orcid":"0000-0002-3395-6012","order":9}],"abstract":"\u003cp\u003eCentromeres, defined by CENP-A-containing nucleosomes, direct kinetochore assembly for spindle attachment. In mitosis, CENP-A and the constitutive centromere-associated network (CCAN) of the inner kinetochore are arranged into bipartite subdomains within clearings of chromatin. However, less is known about their architecture during interphase. We report here an unrecognized structural role for the CENP-A chaperone machinery in establishing interphase centromere architecture. In interphase, CENP-A and the CCAN assemble conserved shell-like structures that enclose a chromatin-poor central cavity. This cavity is occupied by the interphase-specific CENP-A chaperone complex, which promotes CENP-A assembly once per cell cycle. The presence of the chaperone complex, but not its CENP-A-incorporating activity, is required to generate both the shell architecture and chromatin clearing. The CCAN scaffold CENP-C exhibits radial organization throughout the structure and is essential for its formation, primarily by recruiting the HJURP chaperone. Our findings broaden the role of the CENP-A chaperone machinery to include the structural organization of interphase vertebrate centromeres, independent of CENP-A deposition.\u003c/p\u003e\n","funders":[{"organization":"Janelia Research Campus","identifierType":"ror","identifier":"https://ror.org/013sk6x84","awardNumber":"","awardDescription":"","awardTitle":""},{"organization":"National Cancer Institute","identifierType":"ror","identifier":"https://ror.org/040gcmg81","awardNumber":"1ZIABC011491-13","awardURI":"https://reporter.nih.gov/project-details/11414139","awardTitle":"Role of kinetochore proteins in chromosome segregation"},{"organization":"National Heart Lung and Blood Institute","identifierType":"ror","identifier":"https://ror.org/012pb6c26","awardNumber":"1ZIAHL006249-06","awardURI":"https://reporter.nih.gov/project-details/11404498","awardDescription":"","awardTitle":"Chromosome Dynamics and Evolution","order":1},{"organization":"Ministerio de Asuntos Económicos y Transformación Digital","identifierType":"ror","identifier":"https://ror.org/03sv46s19","awardNumber":"","awardDescription":"","awardTitle":"","order":2}],"keywords":["Centromeres","super-resolution microscopy","Kinetochores","HJURP"],"fieldOfScience":"Biological sciences","relatedWorks":[{"relationship":"preprint","identifierType":"DOI","identifier":"https://doi.org/10.1101/2025.11.07.687291"}],"versionNumber":4,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.8gtht774f","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.tdz08kqcv"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.tdz08kqcv/versions"},"stash:version":{"href":"/api/v2/versions/457944"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.tdz08kqcv/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.tdz08kqcv","id":175837,"storageSize":111664,"relatedPublicationISSN":"0340-5443","title":"Code from: Social learning within groups: Hypernetworks capture effects of within-group dynamics on social contagions","authors":[{"firstName":"Matthew","lastName":"Hasenjager","email":"hasenjag27@gmail.com","affiliation":"University of Tennessee at Knoxville","affiliationROR":"https://ror.org/020f3ap87","affiliations":[{"name":"University of Tennessee at Knoxville","ror_id":"https://ror.org/020f3ap87"},{"name":"National Institute for Mathematical and Biological Synthesis","ror_id":"https://ror.org/04vj69e88"}],"orcid":"0000-0003-2193-4120"},{"firstName":"Mark","lastName":"Bailey","email":"Mark.mbailey@gmail.com","affiliation":"National Intelligence University","affiliationROR":"https://ror.org/049sfwc36","affiliations":[{"name":"National Intelligence University","ror_id":"https://ror.org/049sfwc36"}],"order":1},{"firstName":"Nina","lastName":"Fefferman","email":"nina.fefferman@asu.edu","affiliation":"University of Tennessee at Knoxville","affiliationROR":"https://ror.org/020f3ap87","affiliations":[{"name":"University of Tennessee at Knoxville","ror_id":"https://ror.org/020f3ap87"},{"name":"Arizona State University","ror_id":"https://ror.org/03efmqc40"},{"name":"National Institute for Mathematical and Biological Synthesis","ror_id":"https://ror.org/04vj69e88"},{"name":"NSF Center for Analysis and Prediction of Pandemic Expansion"}],"order":2}],"abstract":"\u003cp\u003eGroup size and composition often modulate the outcomes of social processes, including the diffusion of knowledge and behavioral innovations. Incorporating such information within conventional social network analyses is challenging, however, due to their focus on dyadic relationships. Higher-order network approaches such as hypernetworks offer a potential solution by enabling group size and structure to be explicitly incorporated within descriptions of social structure. However, the extent to which this information, relative to dyadic approximations, substantially alters expected outcomes when modeling social processes has not been explored. We develop an agent-based model that simulates the socially transmitted spread of a behavioral innovation. To perform the innovation, knowledgeable individuals must successfully compete over access to limited resources, with competitive interactions modulated by social dominance rank. In our model, we independently vary resource scarcity, dominance skew, individuals’ average number of associates, and whether diffusions are modeled using a dyadic or hypernetwork representation.\u003c/p\u003e\n\u003cp\u003eThe R scripts contained here provide functions for running the simulations described above, including user-designated inputs for resource availability, social dominance distribution, and interaction radii. In addition, scripts are included that reproduce the figures in the manuscript that illustrate the relationship between model parameters and a range of diffusion outcomes. No new data were generated as part of this project. Users are free to download, modify, and/or reuse the provided scripts.\u003c/p\u003e\n","funders":[{"organization":"Oak Ridge Institute for Science and Education","identifierType":"ror","identifier":"https://ror.org/040vxhp34","awardNumber":"","awardDescription":"","awardTitle":"Intelligence Community Postdoctoral Research Fellowship","order":0}],"keywords":["diffusion","group phenotypic composition","hypernetwork","Innovation","Social network analysis","social transmission"],"fieldOfScience":"Biological sciences","versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.tdz08kqcv","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vhhmgqp96"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vhhmgqp96/versions"},"stash:version":{"href":"/api/v2/versions/457941"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vhhmgqp96/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.vhhmgqp96","id":189225,"storageSize":801096,"relatedPublicationISSN":"0307-6946","title":"Data from: Honeybees directly outcompete other flower visitors through interference competition on shared resource","authors":[{"firstName":"Victoria","lastName":"Buckle","email":"vab141@pgr.aru.ac.uk","affiliation":"Anglia Ruskin University","affiliationROR":"https://ror.org/0009t4v78","affiliations":[{"name":"Anglia Ruskin University","ror_id":"https://ror.org/0009t4v78"}],"orcid":"0009-0000-6520-3456"},{"firstName":"Peter","lastName":"Brown","email":"peter.brown@aru.ac.uk","affiliation":"Anglia Ruskin University","affiliationROR":"https://ror.org/0009t4v78","affiliations":[{"name":"Anglia Ruskin University","ror_id":"https://ror.org/0009t4v78"}],"order":1},{"firstName":"Toby","lastName":"Carter","email":"Toby.carter@aru.ac.uk","affiliation":"Anglia Ruskin University","affiliationROR":"https://ror.org/0009t4v78","affiliations":[{"name":"Anglia Ruskin University","ror_id":"https://ror.org/0009t4v78"}],"order":2},{"firstName":"Thomas","lastName":"Ings","email":"Thomas.ings@aru.ac.uk","affiliation":"Anglia Ruskin University","affiliationROR":"https://ror.org/0009t4v78","affiliations":[{"name":"Anglia Ruskin University","ror_id":"https://ror.org/0009t4v78"}],"orcid":"0000-0002-7496-1977","order":3}],"abstract":"\u003cp\u003eHoneybees are known to have a negative impact on wild pollinators. This study examines the effects of interference competition as a mechanism. We observed the behaviours of pollinators foraging on bramble and ivy. Observations took place across two years at UK sites in close proximity to honeybee hives. We documented the outcome of 300 pairs of interactions, amounting to 93 hours of observation time. The outcomes were recorded as ‘win’ where one individual gains access to the resource resulting in a ‘loss’ of forage for the opposite interacting partner, or ‘share’ where two gain access to the resource in parallel with no interaction. Overall, honeybee abundance strongly negatively influenced the abundance of non-\u003cem\u003eApis\u003c/em\u003e pollinators. Competitive interactions were more frequent and led to greater than expected ‘wins’ for honeybees. Honeybees were avoided in 28.4% of interactions on bramble, and 35.6% on ivy. The honeybee displaced or gave chase when interacting with another pollinator in at least 20% of winning outcomes on both plant species.  We conclude that honeybees dominate shared resources by restricting the access of other pollinators to resource, and that the importance of interference competition in pollinator communities is being underestimated.  \u003c/p\u003e\n","keywords":["interference competition","pollinator behaviour","dominant species","Apis mellifera","Colletes hederae","shared resource"],"fieldOfScience":"Natural sciences","methods":"\u003cp\u003eThis  is a summary of the methods section in the associated article in order to interpret data in the supplementary files. Further details of methodology are found in the associated publication ‘Honeybees directly outcompete other flower visitors through interference comp on shared resource’,\u003c/p\u003e\n\u003cp\u003eFocused behaviour observations of honeybees and non-\u003cem\u003eApis\u003c/em\u003e pollinators were made on bramble and ivy during their flowering period across two years 2023-2024 in Cambridgeshire, UK. Site visits were made across a month for two plant species, \u003cem\u003eRubus fruticosus agg\u003c/em\u003e (Bramble) and \u003cem\u003eHedera helix (\u003c/em\u003eivy). \u003cbr\u003e\nSampling areas were selected from five site locations where bramble and ivy were abundant (Table S1). These sites were selected as they were within 300m of known honeybee colonies (ranging 8-12 across sites) so there was a consistent abundance of honeybees and they had a similar habitat, mix of public parkland, nature reserves and edges of meadows. At each site three patches were identified and monitored. During 3-4 sampling runs per patch, conducted on separate days, three quadrats (0.5m\u003csup\u003e2\u003c/sup\u003e) were placed per patch using random coordinates. The quadrats were monitored in three 15-minute time periods during which the following were recorded: the number of flowers (floral units), flower visitor identity and abundance, the number of flowers visited by each individual, and taxonomic richness. For analysis, flower visitors were placed into one of five groups i) honeybees ii) bumblebees iii) solitary bees iv) hoverflies or v) ‘other’ which comprised non-Syrphidae Diptera, butterflies, beetles and wasps. Additional abiotic data, including temperature, humidity, and wind speed (collected with a Kestrel 3000 weather meter (manufactured by Nielsen-Kellerman, USA)) were measured three times at each sampling run, prior to patch observations. Measurements collected were included in the supplemental files (S2 and S3).\u003c/p\u003e\n\u003cp\u003eIn addition to recording the abundance of flower visitors and other variables above, we also observed interactions between flower visitors. During each observation period an interaction was recorded where one individual flower visitor was being aggressive or otherwise disrupting access of another visitor to the same flower head (or cluster). Measurements taken included: the order with which individuals visited a flower (i.e., resident, or incoming), taxa of each visitor, behaviour observed, the outcome of an interaction, which flower visitor initiated the behaviour, and which was the recipient. The outcome of an interaction was allocated as win, lose, share or both leave The data collected were summarised in the interactions supplemental files S4a and S4b, with the ethogram describing behaviours in S7.\u003c/p\u003e\n","versionNumber":4,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.vhhmgqp96","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jm63xsjsc"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jm63xsjsc/versions"},"stash:version":{"href":"/api/v2/versions/457929"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jm63xsjsc/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.jm63xsjsc","id":190166,"storageSize":1075686,"relatedPublicationISSN":"0909-6396","title":"Data from: Understanding thermal conditions provides context for the influence of habitat characteristics on gamebird winter ecology","authors":[{"firstName":"Benjamin","lastName":"Geaumont","email":"benjamin.geaumont@ndsu.edu","affiliation":"North Dakota State University","affiliationROR":"https://ror.org/05h1bnb22","affiliations":[{"name":"North Dakota State University","ror_id":"https://ror.org/05h1bnb22"}],"orcid":"0000-0003-2852-1177"},{"firstName":"Jacob","lastName":"Yetter","email":"","affiliation":"North Dakota State University","affiliationROR":"https://ror.org/05h1bnb22","affiliations":[{"name":"North Dakota State University","ror_id":"https://ror.org/05h1bnb22"}],"order":1}],"abstract":"\u003cp\u003eThese data sets were collected and used as part of a larger study on Ring-necked Pheasant winter roost site selection and winter survival in southwestern North Dakota. These data were collected using radio telemetry to relocate birds. At used sites we used the cropland data layer to determine landscape-level characteristics including land use, patch size, and distance to edge. We also collected similar information at randomly generated points. At each used and random location, we also estimated proximate cover characteristics using estimates of canopy cover, litter depth, snow depth, and maximum vegetation heights. In addition to habitat characteristics, we also gathered weather data from the nearest North Dakota Automated Weather Network Station (Hettinger) or via ibuttons. These data were analyzed primarily with mixed models to determine habitat selection during winter. We also incorporated many of the variables into survival models when appropriate. \u003c/p\u003e\n","funders":[{"organization":"North Dakota State University","identifierType":"ror","identifier":"https://ror.org/05h1bnb22","awardNumber":"","awardDescription":"Agricultural Experiment Station","awardTitle":"","order":0}],"keywords":["gamebirds","survival","habitat selection"],"fieldOfScience":"Biological sciences","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1002/wlb3.01699"}],"versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.jm63xsjsc","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.0vt4b8h8j"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.0vt4b8h8j/versions"},"stash:version":{"href":"/api/v2/versions/457935"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.0vt4b8h8j/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.0vt4b8h8j","id":149517,"storageSize":61827368455,"relatedPublicationISSN":"1470-160X","title":"Data from: Green and blue infrastructure but not anthropogenic drivers affect invertebrate communities in urban ecosystems","authors":[{"firstName":"Joeri","lastName":"Morpurgo","email":"j.morpurgo@cml.leidenuniv.nl","affiliation":"Leiden University","affiliationROR":"https://ror.org/027bh9e22","affiliations":[{"name":"Leiden University","ror_id":"https://ror.org/027bh9e22"}],"orcid":"0000-0001-7286-1991"}],"abstract":"\u003cp\u003eUrban species distributions remain poorly understood. By integrating DNA-based sampling with species distribution models (SDMs), we aim to quantitatively assess urban community assembly. We sampled invertebrate distributions in The Hague, the Netherlands, using two complementary DNA-based methods: traditional bulk trapping (n = 205) and environmental DNA (eDNA) sampling (n = 207). Species were identified using DNA sequencing and Operational Taxonomic Units, with presence-absence data used to develop SDMs driven by vegetation and anthropogenic indicators.\u003c/p\u003e\n","funders":[{"organization":"Dutch Research Council","identifierType":"ror","identifier":"https://ror.org/04jsz6e67","awardNumber":"","awardDescription":"","order":0}],"keywords":["Ecology","Urban","Invertebrates","DNA","metabarcoding","eDNA","green infrastructure","green space"],"fieldOfScience":"Biological sciences","relatedWorks":[{"relationship":"preprint","identifierType":"DOI","identifier":"https://doi.org/10.1101/2024.08.26.609715"},{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1016/j.ecolind.2025.113650"},{"relationship":"supplemental_information","identifierType":"DOI","identifier":"https://doi.org/10.5281/zenodo.21506356"}],"versionNumber":8,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.0vt4b8h8j","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vx0k6dk4f"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vx0k6dk4f/versions"},"stash:version":{"href":"/api/v2/versions/457942"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.vx0k6dk4f/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.vx0k6dk4f","id":163715,"storageSize":1209800,"title":"Data and code from: Evaporative thermoregulation and the ecological significance of panting for lizards","authors":[{"firstName":"Caleb","lastName":"Loughran","email":"caleb.loughran@wnmu.edu","affiliation":"University of New Mexico","affiliationROR":"https://ror.org/05fs6jp91","affiliations":[{"name":"Western New Mexico University","ror_id":"https://ror.org/00r5mr697"},{"name":"University of New Mexico","ror_id":"https://ror.org/05fs6jp91"}],"orcid":"0000-0001-6085-580X"}],"abstract":"\u003cp\u003eThis dataset accompanies the study “Evaporative thermoregulation and the ecological significance of panting for lizards,” which investigates how panting influences activity time and water balance in five species of \u003cem\u003eSceloporus\u003c/em\u003e lizards across elevational gradients in the American Southwest. The data include species-specific physiological measurements (panting thresholds, panting effectiveness, thermal preferences, and critical thermal maxima), as well as outputs from mechanistic niche models (NicheMapR) simulating microclimates, body temperatures, activity periods, and evaporative water loss under recent and projected climate scenarios (+2, +4 °C). These data support analyses quantifying the ecological trade-offs between extended activity time and increased evaporative costs due to panting. The dataset enables reuse for comparative physiological studies, modeling of thermal constraints, and assessments of species vulnerability to climate warming.\u003c/p\u003e\n","keywords":["Lizards","Ecological niches","Ecophysiology"],"fieldOfScience":"Biological sciences","methods":"\u003cp\u003ePhysiological parameters\u003c/p\u003e\n\u003cp\u003eWe investigated five species of \u003cem\u003eSceloporus\u003c/em\u003e lizards (\u003cem\u003eS. bimaculosus\u003c/em\u003e, \u003cem\u003eS. clarkii\u003c/em\u003e, \u003cem\u003eS. cowlesi\u003c/em\u003e, \u003cem\u003eS. jarrovii\u003c/em\u003e, and \u003cem\u003eS. poinsettii\u003c/em\u003e) from the American Southwest. For each species, we used experimentally determined physiological traits, including body mass, preferred temperature (T_pref), panting threshold (T_F_max), critical thermal limits (CT_min, CT_max), and the parameters describing panting capacity (pantmax) and the percentage of body surface available for evaporation during panting (pct_mouth). These values were derived from laboratory respirometry and heating trials (Loughran and Wolf, 2020, 2023).\u003c/p\u003e\n\u003cp\u003eMechanistic microclimate and ectotherm modeling\u003c/p\u003e\n\u003cp\u003eWe used the NicheMapR package in R to simulate hourly microclimatic conditions from 2012 to 2017 at each species' occurrence sites. For each site, we ran the micro_usa() function to produce above-ground and soil temperature profiles, then passed these to the ectotherm() function, parameterized with the species-specific physiological values.\u003c/p\u003e\n\u003cp\u003eEach site was simulated under three warming scenarios (current, +2, and +4 °C) and two shade treatments (shade-seeking disabled and enabled), and each of these was run twice: once with panting enabled (pantmax = 2 with the calibrated, species-specific pct_mouth) and once with panting disabled (pantmax = 1). The ectotherm model returns hourly estimates of body temperature (Tb), activity state, metabolic heat production (QMET), and water loss through cutaneous and ocular evaporation (H2OCut_g, H2OEye_g).\u003c/p\u003e\n\u003cp\u003eData processing\u003c/p\u003e\n\u003cp\u003eFor each run, we summarized the hourly output over the active season (day of year 75–275) to per-site values: mean daily active (foraging) hours, metabolic rate (mW g⁻¹), and evaporative water loss (mg H₂O g⁻¹ h⁻¹ and total g H₂O h⁻¹). The panting and non-panting runs for each site and scenario were combined into a single dataset, tagged with the species, site code, warming scenario, shade treatment, and a panting flag.\u003c/p\u003e\n\u003cp\u003eFinal dataset\u003c/p\u003e\n\u003cp\u003eThe resulting file (all_species_allscenarios_elev.csv) contains one row per species × site × warming scenario × shade treatment × panting state. Key columns:\u003c/p\u003e\n\u003cp\u003eSite — site code\u003cbr\u003e\nSpecies — species\u003cbr\u003e\npanting — TRUE/FALSE\u003cbr\u003e\nTEMP — warming scenario (Current, Warm2 = +2 °C, Warm = +4 °C)\u003cbr\u003e\nshade_enabled — 0 (off) or 1 (on)\u003cbr\u003e\nact_hours — mean daily active hours\u003cbr\u003e\nmeanmggh — evaporative water loss (mg H₂O g⁻¹ h⁻¹)\u003cbr\u003e\nmeangh — total water loss (g H₂O h⁻¹)\u003cbr\u003e\nmeanMET — metabolic rate (mW g⁻¹)\u003cbr\u003e\nmeanTA — air temperature (°C)\u003cbr\u003e\nmeanTB — body temperature (°C); Elevation — site elevation (m)\u003cbr\u003e\nLong, Lat — coordinates.\u003c/p\u003e\n\u003cp\u003eThe scripts used to run these simulations (one per species) are provided as supporting files to ensure reproducibility.\u003c/p\u003e\n","relatedWorks":[{"relationship":"article","identifierType":"DOI","identifier":"https://doi.org/10.1242/jeb.243877"},{"relationship":"article","identifierType":"DOI","identifier":"https://doi.org/10.1242/jeb.224139"}],"versionNumber":5,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.vx0k6dk4f","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.ngf1vhj8c"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.ngf1vhj8c/versions"},"stash:version":{"href":"/api/v2/versions/457824"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.ngf1vhj8c/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.ngf1vhj8c","id":179568,"storageSize":286458714,"relatedPublicationISSN":"0022-0949","title":"Data from: Muscle diffraction at the life science x-ray scattering beamline","authors":[{"firstName":"Khoi","lastName":"Nguyen","email":"khoi.nguyen@ambiotech.us","affiliation":"Accelerated Muscle Biotechnologies","affiliations":[{"name":"Accelerated Muscle Biotechnologies"}],"orcid":"0000-0003-1581-6937","order":0},{"firstName":"Anthony","lastName":"Hessel","email":"anthony.hessel@ambiotech.us","affiliation":"Accelerated Muscle Biotechnologies","affiliations":[{"name":"Accelerated Muscle Biotechnologies"}],"order":1},{"firstName":"Rachel","lastName":"Sadler","email":"rlsadler@arizona.edu","affiliation":"University of Arizona","affiliationROR":"https://ror.org/03m2x1q45","affiliations":[{"name":"University of Arizona","ror_id":"https://ror.org/03m2x1q45"}],"order":2},{"firstName":"Nichlas","lastName":"Engels","email":"engels1@arizona.edu","affiliation":"University of Arizona","affiliationROR":"https://ror.org/03m2x1q45","affiliations":[{"name":"University of Arizona","ror_id":"https://ror.org/03m2x1q45"}],"order":3},{"firstName":"Christine","lastName":"Delligatti","email":"cdellig2@jh.edu","affiliation":"Loyola University Chicago","affiliationROR":"https://ror.org/04b6x2g63","affiliations":[{"name":"Loyola University Chicago","ror_id":"https://ror.org/04b6x2g63"}],"order":4},{"firstName":"Samantha","lastName":"Harris","email":"samharris@arizona.edu","affiliation":"University of Arizona","affiliationROR":"https://ror.org/03m2x1q45","affiliations":[{"name":"University of Arizona","ror_id":"https://ror.org/03m2x1q45"}],"order":5},{"firstName":"Lin","lastName":"Yang","email":"lyang@bnl.gov","affiliation":"Brookhaven National Laboratory","affiliationROR":"https://ror.org/02ex6cf31","affiliations":[{"name":"Brookhaven National Laboratory","ror_id":"https://ror.org/02ex6cf31"}],"order":6}],"abstract":"\u003cp\u003eWe report on recent methodological advances at the Life Science X-ray Scattering (LiX) beamline of the National Synchrotron Light Source II (NSLS-II) to support small-angle X-ray scattering experiments on skeletal and cardiac muscle tissues. These experiments have been routinely performed at the BioCAT beamline of the Advanced Photon Source (APS) over the past two decades to measure sarcomeric protein organization within healthy and diseased muscle tissues and provide direct molecular evidence for their functional roles and dynamics. Many recent advances in our understanding of sarcomeric proteins relied on diffraction data and include, as examples, MyBP-C, crossbridge SRX/DRX states, and titin. With LiX now available for muscle experimentation, more muscle users can be supported which will speed up research of sarcomeric proteins, muscle biomechanics, and skeletal and cardiac myopathies. LiX explicitly focuses on high-throughput muscle diffraction with rapid sample turnover and semi-automated data processing. These operations have been tested and validated on skeletal and cardiac tissues sourced from both humans and multiple animal models including pig, rat, mouse, and zebrafish.\u003c/p\u003e\n","funders":[{"organization":"National Institute of General Medical Sciences","identifierType":"ror","identifier":"https://ror.org/04q48ey07","awardNumber":"1R43GM156170-01","awardURI":"https://reporter.nih.gov/project-details/11007351","awardDescription":"","awardTitle":"Expanding synchrotron applications in biomedical research: Myocardial and skeletal muscle imaging at Brookhaven National Labs","order":0},{"organization":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","identifierType":"ror","identifier":"https://ror.org/006zn3t30","awardNumber":"1R01AR083970-01A1","awardURI":"https://reporter.nih.gov/project-details/11045522","awardDescription":"","awardTitle":"Structure and function of myosin binding protein-C in skeletal muscles","order":1},{"organization":"National Heart Lung and Blood Institute","identifierType":"ror","identifier":"https://ror.org/012pb6c26","awardNumber":"5R01HL080367-17","awardURI":"https://reporter.nih.gov/project-details/11063187","awardDescription":"","awardTitle":"Role of Cardiac Myosin Binding Protein-C in the Regulation of Myocardial Contraction","order":2},{"organization":"Deutsche Forschungsgemeinschaft","identifierType":"ror","identifier":"https://ror.org/018mejw64","awardNumber":"454867250","awardDescription":"","awardTitle":"","order":3},{"organization":"National Institute of General Medical Sciences","identifierType":"ror","identifier":"https://ror.org/04q48ey07","awardNumber":"5P30GM133893-07","awardURI":"https://reporter.nih.gov/project-details/11195021","awardDescription":"","awardTitle":"X-ray Scattering Technology Core","order":4},{"organization":"Office of the Director","identifierType":"ror","identifier":"https://ror.org/00fj8a872","awardNumber":"1S10OD012331-01","awardURI":"https://reporter.nih.gov/project-details/8334938","awardDescription":"","awardTitle":"A Simultaneous SAXS/WAXS Detector System for Solving Biological Structures","order":5},{"organization":"United States Department of Energy","identifierType":"ror","identifier":"https://ror.org/01bj3aw27","awardNumber":"KP1607011","awardDescription":"","awardTitle":"","order":6}],"keywords":["Skeletal muscles","X-ray diffraction","Synchrotrons"],"fieldOfScience":"Biological sciences","methods":"\u003cp\u003eProcessed X-ray diffraction data of mouse skeletal EDL muscles at 2.7um sarcomere length and room temperature (~22C) under three states: Control, + tobacco etch virus protease, and + mavacamten. Data was acquired at the LiX beamline of NSLS-II. The mice were SnoopC2, an engineered line that controllably cleaves away N-terminal fast myosin binding protein C upon incubation with tobacco etch virus protease.\u003c/p\u003e\n\u003cp\u003eData were saved as .tiff files with floating point precision. An image of AgBH is also provided as a calibration standard.\u003c/p\u003e\n","relatedWorks":[{"relationship":"preprint","identifierType":"DOI","identifier":"https://doi.org/10.64898/2026.02.11.705260"},{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1242/jeb.252250"}],"versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"metadata_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.ngf1vhj8c","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":10,"downloads":1,"citations":1}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.j6q573nwf"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.j6q573nwf/versions"},"stash:version":{"href":"/api/v2/versions/457988"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.j6q573nwf/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.j6q573nwf","id":187880,"storageSize":11895,"relatedPublicationISSN":"0269-283X","title":"Data from: Effect of the insecticide cypermethrin on behavior and oxidative stress in the spider \u003cem\u003eLoxosceles laeta\u003c/em\u003e","authors":[{"firstName":"Carlos F","lastName":"Garcia","email":"cfgarcia1123@yahoo.com.ar","affiliation":"Universidad Nacional de La Plata","affiliationROR":"https://ror.org/01tjs6929","affiliations":[{"name":"Universidad Nacional de La Plata","ror_id":"https://ror.org/01tjs6929"}],"orcid":"0000-0001-5934-6899"},{"firstName":"Aldana","lastName":"Laino","email":"aldana_laino@gmail.com","affiliation":"Centro Científico Tecnológico - La Plata","affiliationROR":"https://ror.org/03qan4b12","affiliations":[{"name":"Centro Científico Tecnológico - La Plata","ror_id":"https://ror.org/03qan4b12"}],"order":1},{"firstName":"Analia","lastName":"Seoane","email":"analiaseoane@hotmail.com","affiliation":"Universidad Nacional de La Plata","affiliationROR":"https://ror.org/01tjs6929","affiliations":[{"name":"Universidad Nacional de La Plata","ror_id":"https://ror.org/01tjs6929"}],"order":2},{"firstName":"Sergio","lastName":"Mijailovsky","email":"smijailovsky@med.unlp.edu.ar","affiliation":"Consejo Nacional de Investigaciones Científicas y Técnicas","affiliationROR":"https://ror.org/03cqe8w59","affiliations":[{"name":"Consejo Nacional de Investigaciones Científicas y Técnicas","ror_id":"https://ror.org/03cqe8w59"}],"order":3}],"abstract":"\u003cp\u003eLoxoscelism, caused by bites from \u003cem\u003eLoxosceles\u003c/em\u003e spiders, is a global health concern. Control of these spiders with insecticides remains poorly understood and requires assessment at both biochemical and behavioral levels. We evaluated the ability of \u003cem\u003eLoxosceles laeta\u003c/em\u003e to detect cypermethrin-treated surfaces and examined the effects of exposure on enzymatic activity, oxidative stress, biomolecule oxidation, and locomotor behavior. Spiders preferred untreated surfaces and increased movement speed on treated ones, indicating a repellent effect. Acetylcholinesterase activity remained unchanged, whereas antioxidant enzymes showed varied responses: catalase and glutathione reductase increased significantly, while superoxide dismutase, glutathione S-transferase, and glutathione peroxidase were unaffected. Reactive oxygen species levels and lipid peroxidation did not increase, although DNA damage was detected. Exposure also reduced the distance traveled over 24 h. This study provides the first combined behavioral and biochemical analysis of \u003cem\u003eL. laeta\u003c/em\u003e exposed to cypermethrin, offering key insights for management and toxicity assessment in medically relevant urban spiders.\u003c/p\u003e\n","funders":[{"organization":"Biochemistry Research Institute of La Plata","identifierType":"ror","identifier":"https://ror.org/018gb4016","awardNumber":"M238","awardDescription":"","awardTitle":"","order":0}],"keywords":["Oxidative stress","Loxosceles laeta","cypermethrin","Cuticular hydrocarbons"],"fieldOfScience":"Natural sciences","relatedWorks":[{"relationship":"supplemental_information","identifierType":"DOI","identifier":"https://doi.org/10.5281/zenodo.21795016"}],"versionNumber":5,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.j6q573nwf","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wh70rxx4g"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wh70rxx4g/versions"},"stash:version":{"href":"/api/v2/versions/457997"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.wh70rxx4g/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.wh70rxx4g","id":190797,"storageSize":73351,"title":"Data and code from: The antipredator responses of releasing defensive chemicals and losing legs in \u003cem\u003eLeiobunum\u003c/em\u003e Opiliones","authors":[{"firstName":"Sage A.","lastName":"DeLong","email":"sdelo@uic.edu","affiliation":"University of Illinois Chicago","affiliationROR":"https://ror.org/02mpq6x41","affiliations":[{"name":"University of Illinois Chicago","ror_id":"https://ror.org/02mpq6x41"}],"orcid":"0009-0004-2273-1661","order":0},{"firstName":"Ignacio","lastName":"Escalante","email":"iem@uic.edu","affiliation":"University of Illinois Chicago","affiliationROR":"https://ror.org/02mpq6x41","affiliations":[{"name":"University of Illinois Chicago","ror_id":"https://ror.org/02mpq6x41"}],"orcid":"0000-0003-1919-4303","order":1}],"abstract":"\u003cp\u003eHaving multiple antipredator defense mechanisms is common across animal taxa. However, deciding which one to use upon encountering a predator remains puzzling. To gather context and determine how to respond, animals often consider contextual factors as well as their own phenotypic traits. To explore the decision-making process in predator avoidance, we studied the responses of two sympatric species of Opiliones, \u003cem\u003eLeiobunum aldrichi\u003c/em\u003e and \u003cem\u003eL.\u003c/em\u003e \u003cem\u003evittatum\u003c/em\u003e. We experimentally tested whether the likelihood of releasing chemical secretions or voluntarily losing legs (autotomy) is influenced by variation in these arachnids’ morphological traits, their microhabitat use, and/or the stimulus intensity imposed by potential predators. We provided individuals with one of three predatory stimuli: low-intensity (grabbing them), high-intensity (grabbing + squeezing them), or inducing them to release legs (autotomy). We found that \u003cem\u003eL. vittatum\u003c/em\u003e females subjected to high-intensity treatment are most likely to release chemical secretions. Neither body size nor leg length affected the likelihood of secretion. Additionally, foliage-roosting individuals (\u003cem\u003eL. vittatum\u003c/em\u003e males and females) were more likely to secrete than tree-roosting (\u003cem\u003eL. aldrichi\u003c/em\u003e males) individuals. However, when we further explored mixed-roosting individuals (\u003cem\u003eL. aldrichi\u003c/em\u003e females), we found that those found roosting in foliage were as likely to secrete as those roosting in trees. Regarding leg loss, we found that this defensive behavior was not influenced by species, sex, morphology, or habitat use. The use of defensive secretions in \u003cem\u003eLeiobunum\u003c/em\u003e Opiliones is therefore influenced by multiple factors (species, sex, habitat phenotype, and stimulus intensity), whereas leg loss is not. Instead, autotomy might be a less flexible defense mechanism, triggered upon surpassing a high threshold of holding stimuli. Overall, our findings illustrate how animals with multiple antipredator defenses consider many factors when deciding how to respond to a predatory stimulus.\u003c/p\u003e\n","funders":[{"organization":"University of Illinois Chicago","identifierType":"ror","identifier":"https://ror.org/02mpq6x41","awardNumber":"","awardDescription":"College of Liberal Arts and Sciences","awardTitle":"start-up funds to IEM","order":0},{"organization":"Animal Behavior Society","identifierType":"ror","identifier":"https://ror.org/031nh9x49","awardNumber":"","awardDescription":"","awardTitle":"Graduate research award","order":1},{"organization":"American Arachnological Society","identifierType":"ror","identifier":"https://ror.org/02pfy0v45","awardNumber":"","awardDescription":"","awardTitle":"Graduate research award","order":2}],"keywords":["Opiliones","Animal defenses","Ecology","Evolutionary biology"],"fieldOfScience":"Natural sciences","methods":"\u003cp\u003eWe conducted fieldwork in the riparian areas of Camp Pine Woods/Lake Avenue Woods-East (42°05'12\"N 87°53'09\"W, 197 m in elevation) and LaBagh Woods (41°58'50\"N 87°44'41\"W, 182 m), on the Des Plaines River and the North Branch Chicago River, respectively, in northeastern Illinois, USA, in July and August 2025 and in July 2026. We collected data between 09:30 and 13:30 hours.\u003c/p\u003e\n\u003cp\u003eWe studied two common species: \u003cem\u003eL. aldrichi\u003c/em\u003e, identified by their small bodies, long legs, and knees with distinctive white bands on legs II and VI. We identified \u003cem\u003eL. aldrichi\u003c/em\u003e males by their circular, orange to light brown-colored bodies, whereas females have oblong bodies with a ventral coloration fading from white to brown or orange, and a dark central figure. \u003cem\u003eL. vittatum\u003c/em\u003e is larger in body size than \u003cem\u003eL. aldrichi\u003c/em\u003e, are orange, white, or brown dorsally, with a dark central figure. \u003cem\u003eL. vittatum\u003c/em\u003e males have a laterally tapered body shape and long pedipalps that protrude above their prosoma.\u003c/p\u003e\n\u003ch3\u003e\n\u003ca href=\"#general-behavioral-trial-methods\" aria-hidden=\"true\" class=\"anchor\" id=\"general-behavioral-trial-methods\"\u003e\u003c/a\u003eGeneral behavioral trial methods\u003c/h3\u003e\n\u003cp\u003eWe randomly exposed each individual to only one of three predation-emulating trial types: only grabbing (low intensity), grabbing and squeezing (high intensity), or induced leg loss. We wore gloves in all trials and wiped them with alcohol-based hand sanitizer between trials when an individual secreted and after every fifth individual, to prevent the potential influence of chemical cues on the next trial. We conducted a total of 368 trials in 2025 on males and females of both species, and 180 trials in 2026 only on \u003cem\u003eL. aldrichi\u003c/em\u003e females.\u003c/p\u003e\n\u003ch3\u003e\n\u003ca href=\"#predator-intensity-trials\" aria-hidden=\"true\" class=\"anchor\" id=\"predator-intensity-trials\"\u003e\u003c/a\u003ePredator intensity trials\u003c/h3\u003e\n\u003cp\u003eTo examine how stimulus intensity may influence the likelihood of secretion, we conducted two types of trials with different intensities. One treatment had low intensity, consisting of gently grabbing the individual by hand as quickly as possible and by as many legs as possible to simulate being grabbed by a predator (and to prevent leg loss). We then visually checked each individual for droplets on the dorsal side near the coxae of legs I and II, caused by the secretion of defensive chemicals from the ozopores. If no secretion droplets were seen, we smelled the individual after holding it ~2 cm from the nose of one of us (SAD), with its dorsal side up, to ensure proximity to the ozopores, as the secretions have a foul odor.\u003c/p\u003e\n\u003cp\u003eThe second type was a high-intensity trial, in which each individual experienced the previously described grabbing, followed immediately by a gentle dorsoventral squeezing, to emulate being bitten by a predator. One of us (SAD) squeezed every individual after holding it dorsal side up against the middle finger with legs I–IV restrained, then placing the tip of the right-hand index finger on the dorsal side of the individual and pushing lightly for 1 s. We then checked for signs of secretion as described above.\u003c/p\u003e\n\u003ch3\u003e\n\u003ca href=\"#induced-leg-loss-trials\" aria-hidden=\"true\" class=\"anchor\" id=\"induced-leg-loss-trials\"\u003e\u003c/a\u003eInduced leg loss trials\u003c/h3\u003e\n\u003cp\u003eIn the third treatment type, we induced leg loss. While holding the individual by multiple legs, we gripped the femur of leg III with forceps just proximal to the femoral trochanter joint, as previously done in Opiliones. We chose leg III as Opiliones are less likely to be missing pair III legs than those in pair IV. Once we grasped the target leg, we released the remaining legs. We then allowed the animal to perch on the hand, which rested on the ground below, with the target leg still grasped, to avoid jostling the individual and, incidentally, forcing leg loss. We then held the target leg for 10 s and recorded whether the animal released the leg. If the leg was not released in 10 s, we released the target leg from the forceps, and the individual ran away on the ground. We followed the welfare protocol when inducing leg loss to ensure the safety and well-being of each individual. Our study also adhered to the ethical guidelines of the Association for the Study of Animal Behavior.\u003c/p\u003e\n\u003ch3\u003e\n\u003ca href=\"#morphological-measures\" aria-hidden=\"true\" class=\"anchor\" id=\"morphological-measures\"\u003e\u003c/a\u003eMorphological measures\u003c/h3\u003e\n\u003cp\u003eTo examine if morphology influences antipredator responses, we measured the body width and leg IV length of all individuals tested using a digital caliper to the nearest 0.01 mm. Both measures are standard proxies for body size in Eupnoi Opiliones. We measured body width as the maximum distance from the third and seventh coxae in dorsal view, and the length of leg IV by holding the individual by multiple legs, with the dorsal side up, extending the fourth leg, and gently pressing on the femur-patella joint to fully extend the leg. The measurement was taken from the end of the trochanter to the distal end of the leg. For the stimulus-intensity trials, we measured morphological traits after the trial; for the leg loss treatment, we measured and marked individuals prior to the trial (this way, each animal could be released immediately after the trial). We marked individuals on the distal end of the body with a dot of non-toxic marker (POSCA) to avoid resampling in subsequent visits.\u003c/p\u003e\n\u003ch3\u003e\n\u003ca href=\"#habitat-phenotypes\" aria-hidden=\"true\" class=\"anchor\" id=\"habitat-phenotypes\"\u003e\u003c/a\u003eHabitat phenotypes\u003c/h3\u003e\n\u003cp\u003eTo test the habitat-phenotype hypothesis, we sorted all males and females of both species into habitat phenotypes based on previously collected habitat-use data (DeLong et al., \u003cem\u003ein review\u003c/em\u003e). We sorted the individuals sampled in this project into three habitat phenotypes: (1) \u003cem\u003eL. aldrichi\u003c/em\u003e males primarily roost on tree trunks; (2) \u003cem\u003eL. aldrichi\u003c/em\u003e females roost on a mixture of tree trunks and shrub/herbaceous plant foliage; and (3) \u003cem\u003eL. vittatum\u003c/em\u003e males and females roost primarily on shrub/herbaceous plant foliage (DeLong et al., \u003cem\u003ein review\u003c/em\u003e). From here on, we will refer to the habitat-use phenotypes as trees, mixed, and foliage.\u003c/p\u003e\n\u003cp\u003eTo further explore how substrate use influences the engagement in the two defensive behaviors explored (secretions and leg loss), while controlling for species and sex, we conducted a follow-up experiment with female \u003cem\u003eL. aldrichi\u003c/em\u003e at Camp Pine Woods/Lake Avenue Woods-East in July 2026. We recorded the responses of 30 females found roosting in trees and 30 found roosting in foliage to the three stimuli (grabbing, grabbing + squeezing, or leg loss). Hence, we had a total of 180 individuals. By recording each \u003cem\u003eL. aldrichi\u003c/em\u003e female’s roosting substrate, we teased apart the influence of substrate use on defenses while controlling for species and sex.\u003c/p\u003e\n","versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.wh70rxx4g","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.8sf7m0d53"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.8sf7m0d53/versions"},"stash:version":{"href":"/api/v2/versions/457981"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.8sf7m0d53/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.8sf7m0d53","id":190512,"storageSize":28953139,"relatedPublicationISSN":"0962-8452","title":"Ecology drives the degree of convergence in the gene expression of extremophile fishes","authors":[{"firstName":"Michael","lastName":"Tobler","email":"michi.tobler@gmail.com","affiliation":"University of Missouri–St. Louis","affiliationROR":"https://ror.org/037cnag11","affiliations":[{"name":"University of Missouri–St. Louis","ror_id":"https://ror.org/037cnag11"},{"name":"Saint Louis Zoo","ror_id":"https://ror.org/03g0fjg84"}],"orcid":"0000-0002-0326-0890"},{"firstName":"Ryan","lastName":"Greenway","email":"rgreenway@ab.mpg.de","affiliation":"Max Planck Institute of Animal Behavior","affiliationROR":"https://ror.org/026stee22","affiliations":[{"name":"Max Planck Institute of Animal Behavior","ror_id":"https://ror.org/026stee22"}],"order":1},{"firstName":"Joanna","lastName":"Kelley","email":"jokelley@ucsc.edu","affiliation":"University of California, Santa Cruz","affiliationROR":"https://ror.org/03s65by71","affiliations":[{"name":"University of California, Santa Cruz","ror_id":"https://ror.org/03s65by71"}],"order":2}],"abstract":"\u003cp\u003eThis repository contains the data and code used to analyze patterns of convergent gene expression in hydrogen sulfide-adapted poeciliid fishes. The dataset includes: (1) a gene expression matrix of fragments per kilobase of transcript per million mapped reads (FPKM) for 31,805  genes across 118 gill transcriptomes representing 20 fish lineages from sulfidic and nonsulfidic habitats; (2) environmental measurements for sulfide spring localities, including water chemistry variables (temperature, pH, conductivity, dissolved oxygen, and hydrogen sulfide concentration); (3) the maximum-likelihood phylogenetic tree used for comparative analyses; and (4) R scripts used to reproduce the analyses, including environmental principal component analyses, expression variance and evolution (EVE) models, phylogenetic mixed models, and figure generation. The data enable replication of all statistical analyses. Raw RNA-sequencing reads are available separately through the NCBI Sequence Read Archive under BioProject accessions PRJNA473350 and PRJNA608180. The data contain no personally identifiable information or human subjects and have no known ethical or legal restrictions beyond the terms of this repository.\u003c/p\u003e\n","funders":[{"organization":"Division of Integrative Organismal Systems","identifierType":"ror","identifier":"https://ror.org/01rvays47","awardNumber":"2311366","awardDescription":"","awardTitle":"ROL: Collaborative research: extreme environments, physiological adaptation, and the origin of species","order":0},{"organization":"Division of Integrative Organismal Systems","identifierType":"ror","identifier":"https://ror.org/01rvays47","awardNumber":"2423844","awardDescription":"","awardTitle":"ROL: Collaborative research: extreme environments, physiological adaptation, and the origin of species","order":1},{"organization":"Des Lee Collaborative Vision in Zoological Studies","identifierType":"ror","identifier":"","awardNumber":"","awardDescription":"","awardTitle":"","order":2}],"keywords":["Poeciliidae","hydrogen sulfide","Gene expression","Convergent evolution"],"fieldOfScience":"Biological sciences","relatedWorks":[{"relationship":"dataset","identifierType":"URL","identifier":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA473350/"},{"relationship":"dataset","identifierType":"URL","identifier":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608180/"}],"versionNumber":5,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.8sf7m0d53","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.3ffbg7b10"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.3ffbg7b10/versions"},"stash:version":{"href":"/api/v2/versions/457985"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.3ffbg7b10/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.3ffbg7b10","id":186741,"storageSize":3024321,"relatedPublicationISSN":"1095-9203","title":"Data from: Gate-tunable biexcitons in electron-hole-electron trilayers","authors":[{"firstName":"Ruishi","lastName":"Qi","email":"ruishiqi@berkeley.edu","affiliation":"University of California, Berkeley","affiliationROR":"https://ror.org/01an7q238","affiliations":[{"name":"University of California, Berkeley","ror_id":"https://ror.org/01an7q238"}],"orcid":"0009-0000-1305-1104"},{"firstName":"Qize","lastName":"Li","email":"qizeli@berkeley.edu","affiliation":"University of California, Berkeley","affiliationROR":"https://ror.org/01an7q238","affiliations":[{"name":"University of California, Berkeley","ror_id":"https://ror.org/01an7q238"}],"order":1},{"firstName":"Zuocheng","lastName":"Zhang","email":"zzhang113@unl.edu","affiliation":"University of California, Berkeley","affiliationROR":"https://ror.org/01an7q238","affiliations":[{"name":"University of California, Berkeley","ror_id":"https://ror.org/01an7q238"}],"orcid":"0000-0001-7851-6101","order":2},{"firstName":"Jingxu","lastName":"Xie","email":"jingxuxie@berkeley.edu","affiliation":"University of California, Berkeley","affiliationROR":"https://ror.org/01an7q238","affiliations":[{"name":"University of California, Berkeley","ror_id":"https://ror.org/01an7q238"}],"orcid":"0009-0000-9691-2474","order":3},{"firstName":"Zhiyuan","lastName":"Cui","email":"zhiyuancui@berkeley.edu","affiliation":"University of California, Berkeley","affiliationROR":"https://ror.org/01an7q238","affiliations":[{"name":"University of California, Berkeley","ror_id":"https://ror.org/01an7q238"}],"order":4},{"firstName":"Takashi","lastName":"Taniguchi","email":"taniguchi.takashi@nims.go.jp","affiliation":"National Institute for Materials Science","affiliationROR":"https://ror.org/026v1ze26","affiliations":[{"name":"National Institute for Materials Science","ror_id":"https://ror.org/026v1ze26"}],"orcid":"0000-0002-1467-3105","order":5},{"firstName":"Kenji","lastName":"Watanabe","email":"WATANABE.Kenji.AML@nims.go.jp","affiliation":"National Institute for Materials Science","affiliationROR":"https://ror.org/026v1ze26","affiliations":[{"name":"National Institute for Materials Science","ror_id":"https://ror.org/026v1ze26"}],"orcid":"0000-0003-3701-8119","order":6},{"firstName":"Michael","lastName":"Crommie","email":"crommie@berkeley.edu","affiliation":"University of California, Berkeley","affiliationROR":"https://ror.org/01an7q238","affiliations":[{"name":"University of California, Berkeley","ror_id":"https://ror.org/01an7q238"}],"order":7},{"firstName":"Feng","lastName":"Wang","email":"fengwang76@berkeley.edu","affiliation":"University of California, Berkeley","affiliationROR":"https://ror.org/01an7q238","affiliations":[{"name":"University of California, Berkeley","ror_id":"https://ror.org/01an7q238"}],"orcid":"0000-0001-8369-6194","order":8}],"abstract":"\u003cp\u003eAttractive and repulsive Coulomb interactions stabilize diverse quantum composites and phases, but electron-hole complexes such as excitons, trions, and biexcitons are usually short-lived. Stable excitons have recently been realized in electron-hole bilayers, whereas larger stable composites such as biexcitons remain elusive. Here we engineer attractive exciton-exciton interactions in an electron-hole-electron trilayer, enabling spontaneous formation of stable interlayer biexcitons. Each biexciton contains two holes in the middle layer and one electron in each outer layer. Spectroscopically, biexcitons produce an optical resonance whose magnetic-field dependence reflects spin-singlet hole pairing. Thermodynamically, their formation suppresses electric polarizability, indicating a finite energy cost to transfer an electron between the two outer layers. We map the biexciton phase diagram and observe biexciton dissociation at higher density, temperature, or magnetic field.\u003c/p\u003e\n","funders":[{"organization":"United States Department of Energy","identifierType":"ror","identifier":"https://ror.org/01bj3aw27","awardNumber":"DE-AC02-05-CH11231","awardDescription":"","awardTitle":"","order":0},{"organization":"United States Department of Defense","identifierType":"ror","identifier":"https://ror.org/0447fe631","awardNumber":"FA9550-23-1-0246","awardDescription":"","awardTitle":"","order":1},{"organization":"Japan Society for the Promotion of Science","identifierType":"ror","identifier":"https://ror.org/00hhkn466","awardNumber":"21H05233","awardDescription":"","awardTitle":"","order":2},{"organization":"Japan Society for the Promotion of Science","identifierType":"ror","identifier":"https://ror.org/00hhkn466","awardNumber":"23H02052","awardDescription":"","awardTitle":"","order":3},{"organization":"Japan Science and Technology Agency","identifierType":"ror","identifier":"https://ror.org/00097mb19","awardNumber":"JPMJCR24A5","awardDescription":"","awardTitle":"","order":4},{"organization":"Kavli Energy NanoScience Institute","identifierType":"ror","identifier":"https://ror.org/03c0kvc14","awardNumber":"","awardDescription":"","awardTitle":"","order":5}],"keywords":["Excitons","Optics","Absorption spectroscopy"],"fieldOfScience":"Physical sciences","versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.3ffbg7b10","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.zs7h44jrq"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.zs7h44jrq/versions"},"stash:version":{"href":"/api/v2/versions/458013"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.zs7h44jrq/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.zs7h44jrq","id":185686,"storageSize":36267,"relatedPublicationISSN":"1752-458X","title":"Data from: Declining habitats directive butterflies within a major stronghold: Challenges for conservation","authors":[{"firstName":"Klaus","lastName":"Fischer","email":"klausfischer@uni-koblenz.de","affiliation":"Universität Koblenz","affiliationROR":"https://ror.org/0433e6t24","affiliations":[{"name":"Universität Koblenz","ror_id":"https://ror.org/0433e6t24"}],"orcid":"0000-0002-2871-246X"}],"abstract":"\u003cp\u003eBiodiversity is globally declining, with specialists being more strongly affected than generalists.\u003c/p\u003e\n\u003cp\u003eMyrmecophilous \u003cem\u003ePhengaris nausithous\u003c/em\u003e and \u003cem\u003eP. teleius\u003c/em\u003e are highly specialised grassland butterflies and flagship species for European nature conservation. Ongoing declines despite much research effort suggest implementation deficits or hitherto disregarded threats, e.g. imposed by climate change.\u003c/p\u003e\n\u003cp\u003eWe investigated population structure changes and habitat preferences of both species in the Westerwald mountain range, western Germany, to settle this issue.\u003c/p\u003e\n\u003cp\u003eSince 1994, patch occupancy declined by 64% in \u003cem\u003eP. teleius\u003c/em\u003e and by 51% in \u003cem\u003eP. nausithous\u003c/em\u003e in the study area, and since 2006 by 56% in \u003cem\u003eP. teleius\u003c/em\u003e and by 3% in \u003cem\u003eP. nausithous\u003c/em\u003e in the core of the study area. Declines were mainly driven by inappropriate timing of mowing, grassland intensification, and habitat conversion. The occurrence of both species was strongly related to host plant abundance and vegetation height, with higher vegetation indicating a longer time since mowing and a concomitantly higher abundance of flower heads for egg-laying. Both species are suitable indicators for butterfly communities of moist meadows.\u003c/p\u003e\n\u003cp\u003eIn the future, climate change might impose additional threats, as indicated by spatial shifts of the principal host ant of \u003cem\u003eP. nausithous\u003c/em\u003e, \u003cem\u003eM. rubra\u003c/em\u003e, from open meadows to moister and shadier fringe habitats. Future conservation measures should therefore include water retention, establishing old grass strips, and planting solitary trees in addition to an appropriate grassland management.\u003c/p\u003e\n","funders":[{"organization":"Dutch Butterfly Conservation","identifierType":"ror","identifier":"https://ror.org/01yt2j759","awardNumber":"","awardDescription":"","awardTitle":"","order":0},{"organization":"Universität Koblenz","identifierType":"ror","identifier":"https://ror.org/0433e6t24","awardNumber":"","awardDescription":"","awardTitle":"","order":1}],"keywords":["Conservation biology","Ecology","Moths and butterflies"],"fieldOfScience":"Biological sciences","versionNumber":3,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.zs7h44jrq","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jsxksn0nc"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jsxksn0nc/versions"},"stash:version":{"href":"/api/v2/versions/458016"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.jsxksn0nc/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.jsxksn0nc","id":160399,"storageSize":157863254,"relatedPublicationISSN":"0027-8424","title":"Data from: Recent high-severity wildfires in a dry-conifer landscape are unprecedented over five centuries and foretell future forest loss","authors":[{"firstName":"Andreas","lastName":"Wion","email":"drymixedconifer@gmail.com","affiliation":"Colorado State University","affiliationROR":"https://ror.org/03k1gpj17","affiliations":[{"name":"Colorado State University","ror_id":"https://ror.org/03k1gpj17"},{"name":"New Mexico Highlands University","ror_id":"https://ror.org/016tyxe19"}],"orcid":"0000-0002-0701-2843"}],"abstract":"\u003cp\u003eThis dataset supports an analysis of historical fire synchrony, modern high-severity wildfire, and the persistence of fire-scar records in the Jemez Mountains of northern New Mexico, USA. The archive includes fire-scar event data, buffered fire-scar sampling locations, study-area and fire-perimeter polygons, a forest-cover mask, neutral landscape model simulations of high-severity fire, filtered simulation subsets, bootstrap results, and R code used in the analysis. The simulations were used to evaluate how spatial patterns of high-severity fire could affect the survival of historical fire records and remaining forest across the study landscape. These data may be useful for research on fire history, landscape change, wildfire severity, ecological memory, and the vulnerability of dendroecological records to contemporary disturbance.\u003c/p\u003e\n","funders":[{"organization":"United States Geological Survey","identifierType":"ror","identifier":"https://ror.org/035a68863","awardNumber":"","awardDescription":"Ecosystem Mission Area - Land Change Science","awardTitle":"","order":0}],"keywords":["Wildfires","Spatial and landscape ecology","New Mexico"],"fieldOfScience":"Natural sciences","relatedWorks":[{"relationship":"software","identifierType":"DOI","identifier":"https://doi.org/10.5281/zenodo.15643210"}],"versionNumber":5,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.jsxksn0nc","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.4xgxd25qn"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.4xgxd25qn/versions"},"stash:version":{"href":"/api/v2/versions/458033"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.4xgxd25qn/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.4xgxd25qn","id":175601,"storageSize":860697029,"title":"Hubble Space Telescope maps of Jupiter's Oval BA from 2015 to 2025","authors":[{"firstName":"Shrey","lastName":"Goel","email":"shreygoel@berkeley.edu","affiliation":"University of California, Berkeley","affiliationROR":"https://ror.org/01an7q238","affiliations":[{"name":"University of California, Berkeley","ror_id":"https://ror.org/01an7q238"}],"orcid":"0009-0000-2978-6172","order":0},{"firstName":"Michael H.","lastName":"Wong","email":"mikewong@ssl.berkeley.edu","affiliation":"Space Sciences Laboratory","affiliationROR":"https://ror.org/048400679","affiliations":[{"name":"Space Sciences Laboratory","ror_id":"https://ror.org/048400679"}],"orcid":"0000-0003-2804-5086","order":1},{"firstName":"Amy A.","lastName":"Simon","affiliation":"Goddard Space Flight Center","affiliationROR":"https://ror.org/0171mag52","affiliations":[{"name":"Goddard Space Flight Center","ror_id":"https://ror.org/0171mag52"}],"orcid":"0000-0003-4641-6186","order":3}],"abstract":"\u003cp\u003eWe created a dataset of Jupiter’s Oval BA (Wong et al. 2011) utilizing images from the WFC3 instrument (Marinelli \u0026amp; Green 2025) on the Hubble Space Telescope, acquired by the Outer Planet Atmospheres Legacy (OPAL) program (Simon et al. 2015). The data span 11 epochs from 2015 to 2024 and are all in the 631-nm filter (Table 1). The data contain multiple Hubble orbits covering two rotations of Jupiter. The time separation of image pairs ranges from about 40 min to about 10 hours. This data will be used for future vortex speed analysis using Advection-Corrected Correlation Image Velocimetry (ACCIV; Asay-Davis et al. 2009).\u003c/p\u003e\n","funders":[{"organization":"Space Telescope Science Institute","identifierType":"ror","identifier":"https://ror.org/036f5mx38","awardNumber":"GO-13937","awardDescription":"HST","awardTitle":"OPAL","order":0}],"keywords":["Astronomy","Planetary sciences","Jupiter","Atmosphere"],"fieldOfScience":"Physical sciences","methods":"\u003cp\u003eThe dataset consists of Hubble images of Jupiter, cropped to show the atmospheric feature known as Oval BA. The raw images were calibrated to solar reflectance units, cleaned for cosmic rays, and corrected for image distortion. Images in the 631-nm filter were selected if they contained Oval BA. Many other dataframes did not include Oval BA and were not included here. The data were then navigated and corrected for limb darkening as a cosine function of the incidence angle. Cylindrical projection maps were made using planetographic latitude. The latitude/longitude resolution was the same as described in Wong et al. (2021). The latitude range for all images was -15 to -50. The longitude range was 35 degrees centered around Oval BA. Images contain a mask layer in which 1 denotes all valid pixels and 0 denotes pixels excluded, such as areas too close to the limb or imaged with a Jovian moon in front of the planet. Further detail is available in Wong et al. (2020). Images are saved in the HDF5 format, FITS format, and jpeg for easy viewing.\u003c/p\u003e\n","versionNumber":4,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.4xgxd25qn","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}},{"_links":{"self":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.pc866t20m"},"stash:versions":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.pc866t20m/versions"},"stash:version":{"href":"/api/v2/versions/457917"},"stash:download":{"href":"/api/v2/datasets/doi%3A10.5061%2Fdryad.pc866t20m/download"},"curies":[{"name":"stash","href":"https://github.com/datadryad/dryad-app/blob/main/documentation/apis/link_relations.md#{rel}","templated":"true"}]},"identifier":"doi:10.5061/dryad.pc866t20m","id":148191,"storageSize":2670892,"relatedPublicationISSN":"0004-8038","title":"Code and data for: The realized environmental niche varies by biological level in a broadly distributed migratory waterbird species","authors":[{"firstName":"Aimee","lastName":"Van Tatenhove","email":"amv48@cornell.edu","affiliation":"Utah State University","affiliationROR":"https://ror.org/00h6set76","affiliations":[{"name":"Utah State University","ror_id":"https://ror.org/00h6set76"},{"name":"Cornell Lab of Ornithology","ror_id":"https://ror.org/00k86w020"}],"orcid":"0000-0003-2483-1055"},{"firstName":"Clark","lastName":"Rushing","email":"Clark.Rushing@uga.edu","affiliation":"University of Georgia","affiliationROR":"https://ror.org/00te3t702","affiliations":[{"name":"University of Georgia","ror_id":"https://ror.org/00te3t702"}],"orcid":"0000-0002-9283-6563","order":1},{"firstName":"Erica","lastName":"Stuber","email":"erica.stuber@usu.edu","affiliation":"Utah State University","affiliationROR":"https://ror.org/00h6set76","affiliations":[{"name":"Cooperative Research Units","ror_id":"https://ror.org/00nqpc320"},{"name":"Utah State University","ror_id":"https://ror.org/00h6set76"}],"order":2}],"abstract":"\u003cp\u003eQuantifying individual-level variation of environmental niches can provide insight into potential species-level response to environmental change. For migratory species, wide individual environmental niche breadth (the range of environments within a niche) and high variability (the degree of change in environments encompassed within a niche over time) between seasons suggest a species may be relatively resilient to effects of environmental change. Yet, seasonal niche overlap and variability of both individuals and populations have been quantified for few avian species, despite the importance of understanding individual contribution to species-level responses. \u003cem\u003ePelecanus erythrorhynchos\u003c/em\u003e (American White Pelican) is a migratory waterbird with a broad distribution across North America. We quantified the overlap and variability of this species’ realized environmental niche at population- and individual-levels using 4 freely available climate-related variables (minimum, mean, and maximum monthly temperature, total monthly accumulated precipitation at ∼1-km spatial resolution; CHELSA 2.1) and a multi-year GPS telemetry dataset (2016–2018; Utah Division of Wildlife Resources) collected from 13 individuals in the Pacific Flyway. All individuals were tagged by trained ornithologists under relevant permits. When all environmental variables were considered together, the population showed only moderate overlap between the breeding and nonbreeding range niches (Schoener’s D = 0.20). Most individuals did not track their niche seasonally, suggesting that the population may be relatively resilient to environmental change. However, when considering each environmental variable alone, the population tracked only minimum monthly temperature, suggesting that increasing temperatures play an important role in driving northward breeding range shifts through the expansion of available breeding habitat and physiologically tolerable conditions, while the established effects of drought and water limitations impact southern portions of the breeding range.\u003c/p\u003e\n","funders":[{"organization":"Utah State University","identifierType":"ror","identifier":"https://ror.org/00h6set76","awardNumber":"","awardDescription":"","awardTitle":"Fritz L. Knopf doctoral fellowship","order":0}],"keywords":["metapopulation","Niche overlap","niche unfilling","realized niche","satellite telemetry","Waterbird"],"fieldOfScience":"Agriculture, forestry, and fisheries","relatedWorks":[{"relationship":"primary_article","identifierType":"DOI","identifier":"https://doi.org/10.1093/ornithology/ukag004"}],"versionNumber":6,"versionStatus":"submitted","curationStatus":"Published","versionChanges":"files_changed","publicationDate":"2026-08-14","lastModificationDate":"2026-08-14","visibility":"public","sharingLink":"http://datadryad.org/dataset/doi:10.5061/dryad.pc866t20m","license":"https://spdx.org/licenses/CC0-1.0.html","metrics":{"views":0,"downloads":0,"citations":0}}]}}