Trophy constrains the temperature effect on ciliate species turnover rates
Data files
Mar 20, 2025 version files 8.97 MB
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data_for_sharing.xlsx
8.97 MB
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README.md
5.82 KB
Abstract
We applied FlowCam analysis and cross-validated by 18S rDNA-sequences and taxonomic literature to study seasonal and short-term population dynamics and species turnover in ciliate plankton during 15 months with high-frequency samplings in a shallow temperate estuary in Denmark. FlowCam imagery identified 27 phenotypic ciliate entities, and eight genotypes were identified. The analyses showed strong seasonality in biomass, abundance, diversity, trophy, and species turnover. The mixotrophic ciliates increased 30-fold from winter to summer, whereas the abundance of heterotrophic ciliates increased only five times. The two trophic groups also displayed contrasting seasonal diversity patterns. Heterotrophic ciliates increased in richness from 5.5 to 10.5 species in 10 mL, whereas species richness of the mixotrophic community, dominated by Mesodinium rubrum, remained relatively constant at three species per 10 mL sample. Daily species turnover calculated from the decay of similarity was highest for heterotrophic ciliates, and community change rates of 3.1, 15.8 and 30.6 % d-1 were related to ambient temperatures of 4.8, 8.4 and 16 °C. Oscillating species-specific growth rates due to prey-predator interactions can explain faster species turnover rates in heterotrophic ciliates. In contrast, the mixotrophic ciliates community harvest a common supplementary energy source, which may dampen their species-specific population oscillations.
Dataset DOI: 10.5061/dryad.12jm63z71
Description of the data and file structure
Data for ciliate diversity was collected at the inner part of RF in Denmark (55°41'30.19"N, 12°4'55.24"E). seasonal and short-term population dynamics and species turnover in ciliate plankton during 15 months with high-frequency samplings in a shallow temperate estuary in Denmark.
Contact Hans H Jakobsen (hhja@ecos.au.dk) with any questions. This manuscript has been accepted for publication (02/14/2025):
Hansen J.L.S., Altenburger A., Haraguchi L., Carstensen J. Jakobsen H.H. "Trophy constrains the temperature effect on ciliate species turnover rates" ECOSPHERE (accepted). 10.1111/oik.10914
Data files include:
Files and variables
File: data_for_sharing.xlsx
data_for_sharing.xlsx @SHEET"pier"
This sheet contains data on temperature and salinity.
| variabl | units | description |
| :------------------ | :--------------------: | :----------------------------------------------------------------------------------|
| doy | number | Gregorian day of year, january 1st = DOY 1. |
| temp | degree Celsius | temperature in degree Celsius |
| Salinity | salinity | salinity measured in parts per thousands(‰) |
data_for_sharing.xlsx @SHEET"ST60"
This sheet contains data on dissolved totel Nitrogen
| variables | units | description |
| :---------- | :----------: | :---------------------------------------------------------------------------------------------------- |
| doy | number | Gregorian day of year, january 1st = DOY 1. |
| DIN | µM | total dissolved Nitrogen in micro mol concentration |
data_for_sharing.xlsx @SHEET"Ciliates"
This sheeet contain metric data derived from individual FlowCam images
| variables | units | description |
| :---------- | :-----------: | :----------------------------------------------------------------------------------------------------- |
| date | date | Gregorian date |
| year | number | Gregorian year |
| month | number | Gregorian month |
| day | number | Gregorian day |
| doy | number | Gregorian day of year, january 1st = DOY 1. |
| ESD | µm | Equivalent diameter of individual cells |
| volumen | µm3 | Biovolumen of individual cells |
| pgC | PgC | picogram carbon cell-1 |
data_for_sharing.xlsx @SHEET"Wind"
This sheeet contain climate wind data derived from individual FlowCam images
| variables | units | description |
| :------------------------------------ | :------------------: | :-------------------------------------------------------------------------|
| date | date | Gregorian date |
| Average daily wind speed | meters sec-1 | average daily wind speed |
| Daily wind direction (deg.) | grader | average daily wind direction |
| Pressure | millibar | atmospheric air pressure |
| doy | number | Gregorian day of year, january 1st = DOY 1. |
