Data from: Chilling out: Cooler climates triggered divergence of Sabal (Arecaceae: Coryphoideae: Sabaleae) at the end of the mid-Miocene climatic optimum
Data files
Jul 30, 2024 version files 3.91 MB
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Concat_align_133genes_part_2.nex
3.91 MB
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README.md
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Abstract
In this study we explore the biogeographic patterns and processes underlying the diversification of Sabal, a genus of palm with a range that expands from the tropical rainforests of northern South America into the deciduous subtropical forests of the southeastern United States. We estimate divergence times among species of Sabal using two dated fossils as calibration points to inform ancestral reconstructions of the historical distribution of Sabal, and then use floral volatile composition data in select species of Sabal to integrate plant ecological interactions into our discussion of species distributions. Our results suggest extant Sabal originated within the last 21 million years with a divergence event ~14 Mya that effectively split the most recent common ancestor of all southeastern US and West Indian species from the ancestor of a clade of species with their current distribution in Mexico. This divergence event corresponds with the end of the mid-Miocene climatic optimum, which resulted in cooler climates across southeastern North America where extant cold-tolerant taxa S. minor and S. palmetto are currently distributed. Floral volatile data indicate a generalist pollination strategy involving day foraging insects. Among sampled species, floral scent profiles can mostly be characterized by quantitative differences in five main compounds: benzaldehyde, benzyl alcohol, 2-phenylethanol, (E)-β-ocimene, and hexanal. These profiles align with major clades recovered in our phylogenetic analysis of Sabal and are indicative of evolutionary trends in pollination ecology and reproductive isolation within the genus.
https://doi.org/10.5061/dryad.1ns1rn92b
The dataset contains (Concat_align_133genes_part_2) the partitioned nuclear gene alignment used in BEAST.
Description of the data and file structure
Alignment is in a nexus format that contains the best partitioning scheme (as estimated by PartitionFinder) as a data block at the end of the file.
Species names are as follows:
PD= Phoenix dactylifera
libU= Bactris major
libT= Dictyosperma album
libC= Sabal causiarum
libP= Sabal minor
libH= Sabal rosei
libE= Sabal mauritiiformis
libQ= Sabal miamiensis
libI= Sabal maritima
libN= Sabal palmetto
libL= Sabal etonia
libO= Sabal yapa
libG= Sabal bermudana
libX= Sabal uresana
libJ= Sabal mexicana
libM= Sabal guatemalensis
libSD= Sabal domingensis
libS= Sabal pumos
Gene alignment used to estimate divergence times: A supermatrix was generated from all gene alignments generated by Heyduk et al. 2015 (https://doi.org/10.5061/dryad.jm78g) by concatenating separate gene alignment files. We used PartitionFinder V. 2.1.1 (Lanfear et al. 2017) to estimate the optimal partitioning scheme among genes. The partitioned alignment contained 49 partitions with substitution models assigned as either GTR, GTR+G, and GTR+G+I.