Supplementary data from: Phylogeny and macroevolution of a “dead clade walking”: a systematic revision of the Paragaricocrinidae (Crinoidea)
Data files
Sep 26, 2024 version files 4.19 MB
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DataForPhylogeneticData_Data.xlsx
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DiagnosticCharactersForParagaicocrinidSpecies_Data.xlsx
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DiagnosticCharactersForParagaricocrinidGenera_Data.xlsx
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ExplanationOfDataForPhylogeneticAnalysis_Data.xlsx
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README.md
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SupplementaryIInformation1.jpg
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SupplementaryIInformation2.jpg
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SupplementaryIInformation3.jpg
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SupplementaryIInformation4.jpg
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Oct 04, 2024 version files 6.56 MB
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DataForPhylogeneticData_Data.xlsx
14.14 KB
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DiagnosticCharactersForParagaicocrinidSpecies_Data.xlsx
13.54 KB
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DiagnosticCharactersForParagaricocrinidGenera_Data.xlsx
13.15 KB
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ExplanationOfDataForPhylogeneticAnalysis_Data.xlsx
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README.md
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SupplementaryIInformation1.jpg
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SupplementaryIInformation2.jpg
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SupplementaryIInformation3.jpg
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SupplementaryIInformation4.jpg
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Abstract
The Paragaricocrinidae is an enigmatic Late Paleozoic family of camerate crinoids that retained a robustly constructed calyx more typical of Devonian to Early Mississippian crinoids. The discovery of the oldest member of this family, Tuscumbiacrinus madisonensis n. gen., n. sp., initiated a phylogenetic investigation of the Paragaricocrinidae and consideration of its diversification and paleobiogeographic distribution. Phylogenetic analyses demonstrate the need to describe Tuscumbiacrinus n. gen and conduct revisions to preexisting taxa, resulting in the description of Palenciacrinus mudaensis n. gen., n. sp.; Pulcheracrinus n. gen.; Nipponicrinus hashimotoi n. gen., n. sp.; and Nipponicrinus akiyoshiensis n. gen., n. sp. Also, Megaliocrinus exotericus Strimple, 1951, is reassigned to Pulcherarcrinus n. sp. In addition to having an anachronistic morphology, relatively few specimens are known through the ~76 million-year duration of this family. This pattern is unlikely to have resulted from low fossil sampling alone, and instead likely reflects low abundance and/or taxonomic richness of a long-lived waning clade. From its apparent origination in Laurussia during the Mississippian, it diversified into a cosmopolitan clade. Following a diversity drop during the Pennsylvanian, the Paragaricocrinidae persisted but exemplified characteristics of a dead clade walking until its eventual extinction during the Middle Permian (Wordian).
README: Supplementary data from: Phylogeny and macroevolution of a “dead clade walking”: a systematic revision of the Paragaricocrinidae (Crinoidea)
Author affiliations
Richard G. Keyes: Huntsville, AL, USA. rgeo@bellsouth.net
David. F. Wright: Sam Noble Oklahoma Museum of Natural History and School of Geosciences, University of Oklahoma, Norman, OK, USA. wrightdf@ou.edu
William I. Ausich: School of Earth Sciences, Columbus, OH, USA. ausich.1@osu.edu
Description of the data and file structure
Supplementary data includes 4 supplementary figures (jpg) and 4 supplementary tables (xlsx). The supplementary figures include phylogenetic trees not published in the paper and results from additional statistical analyses. The supplementary tables include primary data used for phylogenetic analyses and diagnostic tables that list genera or species and the diagnostic characters used to distinguish among them.
Captions for these supplementary data are the following:
DataForPhylogeneticData_Data.xlsx
Data used to generate phylogenetic trees
ExplanationOfDataForPhylogeneticAnalysis_Data.xlsx
Characters and character states that correspond to information on DataForPhylogeneticAnalysis_Data
DiagnosticCharactersForParagaricocrinidGenera_Data.xlsx
Matrix of genera and characters that differentiate genera of the Paragaricocrinidae
DiagnosticCharactersForParagaicocrinidSpecies_Data.xlsx
Matrix of species and characters that differentiate species of the Paragaricocrinidae.
SupplementaryIInformation1.jpg
Cladogram from parsimony analysis of 11 paragaricocrinid species (Mississippian–Permian) with Amphoracrinus gilbertsoni, Athabascacrinus colemani, Gennaeocrinus kentuckiensis, and Pimlicocrinus clitheroensis as outgroups. Fourteen trees retained; tree length, 142; CI, 0.507; RI, 0.453. Values at nodes indicate the percentage of MPTs recovering each clade. Excluding Tuscumbiacrinus, taxonomic names from the literature at the beginning of this study.
SupplementaryIInformation2.jpg
Cladogram from parsimony analysis of Pennsylvanian species of the Paragaricocrinidae with Amphoracrinus gilbertsoni and Pimlicocrinus clitheroensis as outgroups. Single tree retained length tree length 74, CI, 0.648l; HI, 0.3514; RI 0.5667; RCI, 0.3676. Taxonomic names from the literature at the beginning of this study.
SupplementaryIInformation3.jpg
Probability mass function (pmf) of a Poisson distribution describing the probability of n occurrences along a branch duration of t = 56.6 million years given an average fossil sampling rate of y = 0.088 (median = 0.0920).
SupplementaryIInformation4.jpg
The log-likelihood function of the fossil sampling rate y when n=1 and t=56.6. The red line at y = 0.018 indicates the log maximum-likelihood estimate of fossil sampling implied by the topological position of the Wannerocrinus lineage in Supplemental Figure 1, which is ~5 times lower than expected given the average sampling rate for paragaricocrinid taxa.
Version Change Log
4-Oct-2024: Added figure explanations to each PDF.
Methods
Morphological data set was gathered from actual specimens and from the literature. Tables of these data include input matrix into phylogenetic software and diagnostic characters for defining genera and species of Paragaricocrinidae. Additional data information includes cladograms not included in the manuscript and other results to clarify phylogenetic data. Phylogenetic analyses were completed in Markov chain Monte Carlo (MCMC) simulation in MrBayes 3.2.6.