Data from: Density-dependent feedback across nested levels of organization in a social primate
Data files
Mar 18, 2025 version files 458.36 KB
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README.md
2.90 KB
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Reproduction_Data.RData
84.82 KB
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Survival_Data.RData
370.64 KB
Abstract
The strength and direction of density-dependent mechanisms acting on individual reproduction and survival may vary across the nested levels of organization social animals live in, such that complex patterns of density dependence shape fitness and population growth. Yet knowledge of such processes of population regulation where individuals are simultaneously subjected to contrasting density effects remains limited. We quantify and contrast density effects on components of individual fitness across two nested levels of organization: the population and the social group, using 45 years of demographic data of rhesus macaques. Our analysis reveals opposing density feedback on individual reproduction and survival across levels of organization and shows that density does not affect all life stages equally. While increased population density reduced female reproduction during maturation, females in larger groups were more likely to reproduce. Infant survival was optimal at intermediate population densities, and monkeys in larger groups showed increased survival. Our work shows that population-level density effects on individual reproduction and survival can be as strong as group-level effects and suggests different roles of the philopatric (i.e. females) and dispersing (i.e. males) sexes on the regulation of individual demographic performance. In this way, our work posits testable mechanistic hypotheses for evaluating density effects on components of individual fitness and highlights the need to explicitly consider the organization and demographic structure of social animals when quantifying individual performance and population dynamics.
Data and codes provide examples for estimating the main results presented in tables and figures.
Description of the data and file structure
Code files:
Reproduction_Analysis.R - These codes provide the workflow for estimating population- and group-level density-dependent feedback on individual reproduction using GLMMs.
Survival_Analysis.R - These codes provide the workflow for estimating population- and group-level density-dependent feedback on individual survival using GLMMs.
Data files:
Reproduction_Data.RData - This data frame contains annual individual reproduction status and adult population and adult group density during the 44 year study. year column represents the year the data was recorded in. id represents the ID of each monkey (deidentified). fertility equals 1 if female produced offspring; 0 = if female did not produce offspring. mom represents the ID of the monkey’s mother (deidentified). age is the age in years of the monkey. group_adult_n represents the annual adult group abundance. group_adult_male_n represents the annual adult male group abundance. group_adult_female_n represents the annual adult female group abundance. pop_adult_n represents the total annual adult abundance. pop_adult_male_n represents the total annual adult male abundance. pop_adult_female_n represents the total annual adult female abundance. n_cull represents the number of individuals who were permanently removed from the population in a given year (no culling information for 1973).
Survival_Data.RData - This data frame contains annual individual survival status and adult population and adult group density during the 44 year study. id represents the ID of each monkey (deidentified). sex if f for females, m for males. year column represents the year the data was recorded in. survival equals 1 if the monkey survived a year after; 0 if the monkey did not survive. mom represents the ID of the monkey’s mother (deidentified). age represents the age in years of the monkey. group_adult_n represents the annual adult group abundance. group_adult_male_n represents the annual adult male group abundance. group_adult_female_n represents the annual adult female group abundance. pop_adult_n represents the total annual adult abundance. pop_adult_male_n represents the total annual adult male abundance. pop_adult_female_n represents the total annual adult female abundance. n_cull represents the number of individuals who were permanently removed from the population in a given year (no culling information for 1973).
Sharing/Access information
Data was shared by the Caribbean Primate Research Center, University of Puerto Rico-Medical Sciences Campus, and has no DOI.
Code/Software
All data was run using R Version 4.4.1.
Scripts can be run in order or separately.