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Mass spectrometry-based proteomics of the Aurantiochytrium limacinum ATCC MYA-1381 zoospore-to-vegetative cell transition (MaxQuant processed data)

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Apr 16, 2025 version files 86.48 MB

Abstract

This dataset provides standard MaxQuant proteomic output files generated from an analysis of the Aurantiochytrium limacinum ATCC MYA-1381 zoospore-to-vegetative cell transition. Mass spectrometry data from three biological time-course replicates were analyzed using two separate protein prediction sets: one from a JGI genome annotation and the other from the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP) annotation of the A. limacinum proteome. Each biological replicate in the dataset includes protein abundance measurements across five time points, capturing dynamic proteomic changes associated with cellular remodeling, metabolism, and ectoplasmic network formation. Data is provided as outputted from MaxQuant, including quantitative values for protein group identification and peptide-level measurements.